Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq391 636 2e-177 seq582 567 8e-157 >seq391 Length=7892 Score = 636 bits (704), Expect = 2e-177 Identities = 738/990 (75%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 |||||| | ||| |||| || | ||||| || || |||| ||||| || || | Sbjct 6593 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 6652 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||| || || | ||| | ||||| ||||| || || | |||||| | ||||||| Sbjct 6653 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTC 6711 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 6712 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 6771 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 | || || || ||||| || |||| |||| || ||||| | ||||| || || | Sbjct 6772 ATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAA 6831 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 |||||||||| |||||| ||||||||||| | || || |||||||||| |||| | | Sbjct 6832 TCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCG 6891 Query 160258 TATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 | | |||||| | | || | | |||||||| ||||||||||||||| | || Sbjct 6892 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 6951 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 || | |||||||| || ||||| ||| |||||||| ||||| || || || || ||| Sbjct 6952 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7011 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||| ||| | | || || |||||||||| || || |||| ||||||||| || | Sbjct 7012 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7071 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 ||||||||||||| |||| ||| | |||||||| || || ||||| ||||||||||| | Sbjct 7072 TCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACC 7131 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | || |||||| | || || ||||| |||||||| || || | || ||||||||| | Sbjct 7132 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 7191 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 | | || ||||| | | | || | ||||| || |||| || || ||| | Sbjct 7192 GTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAA 7250 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| | ||||||||||||||||| || || |||||||| || || |||||||| || Sbjct 7251 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTT 7310 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 ||||| ||||||||||||||||| ||||||||||| ||||| | ||||||||| | Sbjct 7311 GGTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTA 7370 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||||||| |||| || ||||| |||||| | ||| |||| || ||||| ||| Sbjct 7371 GCTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTC 7430 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||||| |||||||||||||||||||| || | | ||| |||||||||||||| | ||| Sbjct 7431 AACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAC 7490 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 |||||||| || | | || |||||| ||||||||||||||||||||||| ||||| Sbjct 7491 ACCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 7550 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCT 160946 || || |||||||| || ||| | |||||| Sbjct 7551 GCTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 567 bits (628), Expect = 8e-157 Identities = 742/1021 (73%), Gaps = 6/1021 (1%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| || |||||||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | || |||| ||||||| | || | || |||||| |||| || ||||| || Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||| ||| | || || ||||| ||||| Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCT 25122 Query 161867 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 161924 || | || | ||| ||||| ||| | | | | || ||| || || || || ||| Sbjct 25123 TAACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCT-TTATTGTTACTATGG 25181 Query 161925 GGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTT 161984 |||||||| || ||||||||||| || ||| ||| | || || || |||| ||| Sbjct 25182 GGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTC 25241 Query 161985 GTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCA 162044 || || || |||||||| ||||| ||||| || || ||| | |||||||| ||||| || Sbjct 25242 GTTGCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCT 25301 Query 162045 CGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 162104 || | || | || || || ||||| || || ||||||||||| |||||||||||| Sbjct 25302 CGATCTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 25361 Query 162105 GTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 162164 || || ||||| || || ||||| |||||||| |||||||||| || || ||| Sbjct 25362 GTTTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTT 25421 Query 162165 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTG 162224 || || ||||| || ||||||||| | | ||| ||||||| || ||||||||||| ||| Sbjct 25422 GGTGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTG 25481 Query 162225 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATT 162284 ||||| || ||||||||||||||||| ||| || | || | || || |||| |||||| Sbjct 25482 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATT 25541 Query 162285 CACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 162344 || || | || || |||||||| |||| |||||||| || ||||| || || | Sbjct 25542 CATGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGG 25601 Query 162345 GCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| ||| Sbjct 25602 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 25661 Query 162405 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 162464 || || ||||| || |||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 25662 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 25721 Query 162465 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 162524 || || || | ||| |||||| || |||| | | ||||| || | ||||| Sbjct 25722 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 25781 Query 162525 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACG 162584 ||||| || || ||||| ||||| ||| | ||||| ||||||||||| |||||||| Sbjct 25782 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACT 25841 Query 162585 TTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 162644 |||||||| || || ||||| | || ||||| | ||||| ||| | || || || Sbjct 25842 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 25901 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 || || ||||| ||| |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 25902 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 25961 Query 162705 T 162705 | Sbjct 25962 T 25962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559396015728000