Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq391 581 4e-161 seq582 531 6e-146 >seq391 Length=7892 Score = 581 bits (644), Expect = 4e-161 Identities = 718/979 (73%), Gaps = 2/979 (0%) Strand=Plus/Plus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 |||||| | ||| |||| || | ||||| || || |||| ||||| || || | Sbjct 6593 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTT 6652 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 |||||| || || | ||| | |||||| ||||| || || | |||||| | ||||||| Sbjct 6653 GATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTC 6711 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || || || || || || |||||||| || |||| || || | || || |||| Sbjct 6712 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 6771 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 | || || || ||||| || |||| |||| || ||||| | ||||| || || | Sbjct 6772 ATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAA 6831 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 |||||||||| |||||| ||||||||||| | || || |||||||||| |||| | | Sbjct 6832 TCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCG 6891 Query 181279 TCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACC 181338 | | |||||| | | || | | || ||||| ||||| |||||||| || || Sbjct 6892 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 6951 Query 181339 GCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTG 181398 | | |||||||| || ||||| ||||||||| || ||||| || ||||| || ||| Sbjct 6952 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7011 Query 181399 CTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 181458 |||| ||| | |||| || |||||||||| || ||||| | ||||| || || | Sbjct 7012 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7071 Query 181459 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATC 181518 |||||||||| ||||||| ||| | || ||||| || ||||||||||| || ||||| | Sbjct 7072 TCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACC 7131 Query 181519 CCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACG 181578 | || |||||||| ||||| || |||||||| || || || || || ||||| ||||| | Sbjct 7132 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 7191 Query 181579 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 181638 |||| ||||| || ||| | || | || || || |||| ||| || ||| | | Sbjct 7192 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 181639 GTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTG 181698 |||||| ||||| ||||| ||||| || || |||||||| || || || ||||| |||| Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 181699 GTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 181758 |||| |||||||||||||||||| ||||||||||| ||||| | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 181759 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 181818 | || ||||||||| | || || ||||| || || |||| | || || ||||| || | Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 181819 ACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACA 181878 |||| || || |||||||||||||| ||| | | || | ||||| ||||| | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 181879 CCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 181938 ||||||| || | | |||||||| || || |||||||| ||||| || || || | Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 181939 CGCACAACTTCCCGCTTGA 181957 | || |||||||| || || Sbjct 7552 CTCATAACTTCCCTCTAGA 7570 >seq582 Length=29683 Score = 531 bits (588), Expect = 6e-146 Identities = 725/1006 (72%), Gaps = 6/1006 (1%) Strand=Plus/Plus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| || || || ||||| ||||||||||| || | || Sbjct 24955 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 25014 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | ||| | || |||||| |||| || ||| | ||||| || | Sbjct 25015 TTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCAT 25074 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 182548 |||| ||||| || | || ||| ||| | ||||| ||| | ||||||| | ||||| Sbjct 25075 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGC 25132 Query 182549 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 182608 || || || |||||| || | | | || ||| | | |||| ||||||||||| | Sbjct 25133 GGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGC 25192 Query 182609 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 || ||| |||| || ||||| ||| | || || || |||| |||||| ||||| || Sbjct 25193 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCA 25252 Query 182669 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 182727 ||||| ||||| || || ||||| ||| | | || || ||||||||||| ||| || Sbjct 25253 TGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTG-TTC 25311 Query 182728 GAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGT 182787 | | | ||||| ||||| || || || |||||||| |||||||| || || ||| | Sbjct 25312 AATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 25371 Query 182788 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 182847 |||| || ||||| || || ||||| ||||||||| || || |||||||| || | Sbjct 25372 TCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAG 25431 Query 182848 CGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCC 182907 | || || || ||| | | || |||| || || || |||||||| || ||||| || | Sbjct 25432 CTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTC 25491 Query 182908 ATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCA 182967 |||||||||||||||| ||| || |||| | || ||||| | ||||| ||||||| | Sbjct 25492 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 25551 Query 182968 CAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATT 183027 | ||||| ||||| || | ||| ||||| || |||||| ||||| || || | Sbjct 25552 CTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 25611 Query 183028 CCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCT 183087 | ||||| | || || || ||||| |||||||| || || || |||||||| ||||||| Sbjct 25612 CAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 25671 Query 183088 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183147 | |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 25672 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 25731 Query 183148 TGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 183207 ||| | ||| | | || ||||| | | || || || | || || ||||| |||| Sbjct 25732 CCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATG 25791 Query 183208 ATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAA 183267 | || || || || || | ||||| ||||||||||| || || || |||||||| | Sbjct 25792 ACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCA 25851 Query 183268 AGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATG 183327 | || || || | || ||||| | ||||||||| |||| || ||||| || |||| Sbjct 25852 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 25911 Query 183328 AAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 ||||| | || |||||||| || |||||||| | || ||||| || Sbjct 25912 AAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614498978803200