Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq391 587 1e-162 seq582 470 2e-127 >seq391 Length=7892 Score = 587 bits (650), Expect = 1e-162 Identities = 710/961 (74%), Gaps = 4/961 (0%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || ||||||||| |||| ||||| |||||| | ||||| ||||| || || | |||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| || ||| | | |||||| ||||| || || || || || ||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 ||| || |||| || || | || |||||||| || || || ||||| || |||||| Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || || || | ||||| ||||||||||||||||| || || | || || || Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 | | ||||| |||||||||| ||||| | || | |||||| | ||||| | Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTG 6919 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 |||||||| |||||||||||||| || ||| | |||||| | |||||||| ||| Sbjct 6920 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 6979 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || |||||||| ||| | || || ||| | |||| || ||||||| Sbjct 6980 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 7039 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| || || || | ||||| | || |||||||| || ||||||| ||| | || Sbjct 7040 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGT 7099 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 ||||| || || || |||||| | |||||||| || |||||||| || || || ||||| Sbjct 7100 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 7159 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCC 175092 ||||| || || | || || ||||||||||| |||| || || | ||| || Sbjct 7160 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGATCA 7218 Query 175093 GTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGA 175152 | || || || |||| ||| || ||| | ||||||| ||||| ||||| ||||| | Sbjct 7219 GGGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 7278 Query 175153 CCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCAT 175212 | ||||||||||| || || ||||| || || ||||| |||||||||||||| ||| | Sbjct 7279 CTTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTT 7338 Query 175213 TCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGT 175272 |||||||||| || || | |||||||||||||| || ||||| || | ||||| |||| Sbjct 7339 TCAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGT 7398 Query 175273 TCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGT 175332 | || || | ||| || || ||||| |||||||| || ||||||||||||||||| | Sbjct 7399 TTACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAAT 7458 Query 175333 CTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTG 175392 |||| | || | |||||| | ||| | ||||||||||| ||| | ||||| | ||| Sbjct 7459 CTGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTA 7518 Query 175393 GTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAG 175452 ||||| |||||||| |||||||| | ||||| || |||||||| ||||| || || | Sbjct 7519 ACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTG 7578 Query 175453 C 175453 | Sbjct 7579 C 7579 >seq582 Length=29683 Score = 470 bits (520), Expect = 2e-127 Identities = 711/1009 (70%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | || | ||| | || |||||||| | Sbjct 24947 TGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCT 25006 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | ||| | || || ||| |||| || ||||| ||||| Sbjct 25007 ATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGT 25066 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || ||||| |||||||| | || ||| ||| | || || ||| || || | | Sbjct 25067 AACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTTAA 25125 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | || || || || ||||||||| || | | | || ||| | | |||| ||||||| Sbjct 25126 CCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTC 25185 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 ||||| | || || || || || ||| ||| | || || || ||| | || |||| Sbjct 25186 CTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTG 25245 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 |||| || ||||| ||||| || || || || ||| | |||||||| ||||| || || Sbjct 25246 CTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGAT 25305 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | || || || || || || |||||| |||||| || ||||| ||||| Sbjct 25306 CTGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTT 25365 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 ||| || || | || ||| ||||||| ||| ||||| ||||| || ||||||| Sbjct 25366 CTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTG 25425 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACC 176391 | ||||| || ||||||||| | | ||| |||| || || || |||||||| ||||||| Sbjct 25426 TAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACC 25485 Query 176392 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATG 176451 | || ||||||||||||||||| ||| || | || | || || |||| || || |||| Sbjct 25486 CATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATG 25545 Query 176452 GCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGT 176511 | | |||||| |||||||| ||| ||| ||||| || | || || ||| || | Sbjct 25546 GTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTT 25605 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 | | | || || | ||||| || ||||| |||||||| || |||||||| ||||| | Sbjct 25606 TTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCC 25665 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| |||||||| ||| ||||| |||||| | || ||||||||||| ||||| | Sbjct 25666 AAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTAC 25725 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTG 176691 | || | ||| | ||| | | |||| | | || || || | || || |||| Sbjct 25726 CAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTG 25785 Query 176692 CTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 | ||||| || || ||| || || | ||||| ||||||||||| ||||||||||||| Sbjct 25786 CCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCT 25845 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || || | |||||||| | | || |||||||| || ||||| | Sbjct 25846 ACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGC 25905 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 25906 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGC 25954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729788723587200