Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq391 581 4e-161 seq582 504 9e-138 >seq391 Length=7892 Score = 581 bits (644), Expect = 4e-161 Identities = 701/951 (74%), Gaps = 2/951 (0%) Strand=Plus/Plus Query 177876 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 177935 ||||| || || |||| ||||| || || ||||||| || || | ||| | |||||| Sbjct 6621 AACCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 6680 Query 177936 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGA 177994 ||||| || || | |||||| | |||||||| || || || || || || || ||||| Sbjct 6681 -TCTGTATTTATTATAGCCTTCATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 6739 Query 177995 ACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 178054 ||| || |||| || || | || || ||||| || || || ||||| || |||| | Sbjct 6740 ACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCGGGTGCTATTATTCCTAC 6799 Query 178055 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 178114 ||| || ||||| | ||||| || || ||||||||||| |||||| |||||||||| Sbjct 6800 TTCTGCAGCTATTGGGTTGCACTTTTACCCAATCTGGGAAGCGGCATCAGTTGATGAGTG 6859 Query 178115 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGC 178174 | | || || |||||||||| |||| | || | |||||| | ||||| | | Sbjct 6860 GTTATACAATGGTGGTCCTTATGAACTAATCGTTCTACACTTCTTACTTGGTGTAGCTTG 6919 Query 178175 ATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGT 178234 || ||||| ||||||||||||||| | |||| | |||||||| || ||||| ||| Sbjct 6920 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 6979 Query 178235 AGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCA 178294 ||||| || ||||| || ||||| || | || || ||| || |||| || ||||||| Sbjct 6980 TGCATATTCAGCTCCGGTTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCA 7039 Query 178295 AGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGT 178354 ||| |||||||| | ||||| || || ||||||||||| ||||||| ||| | || Sbjct 7040 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATCGT 7099 Query 178355 TTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGT 178414 ||||| || || |||||||| || |||||||| || |||||||| ||||| || ||||| Sbjct 7100 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 7159 Query 178415 ATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCG 178474 |||||| || || || || ||||| ||||| ||||| ||||| || ||| | | | Sbjct 7160 ATTCGGCGGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 7219 Query 178475 TGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 ||||| || |||| ||||| ||| | ||||| | ||||| ||||| ||||| || Sbjct 7220 GGAAACCACAGAAAATGAATCTGCTAACGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 7279 Query 178535 ATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATT 178594 || |||||||| || || ||||| || || ||||| |||||||||||||||||| || Sbjct 7280 TTATAACATCGTAGCTGCTCATGGTTATTTTGGTCGATTGATCTTCCAATATGCTAGTTT 7339 Query 178595 CAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTT 178654 ||||||||| ||||| | ||||||||| | || || ||||||||| | || || ||||| Sbjct 7340 CAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATTTGGTT 7399 Query 178655 CACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTC 178714 || || |||| | || || ||||| || ||||| || || |||||||||||||| || Sbjct 7400 TACTGCTTTGGGTATTAGTACTATGGCTTTCAACCTAAACGGTTTCAACTTCAACCAATC 7459 Query 178715 CATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGG 178774 | | || | ||||| ||||| | ||||| ||||| || | | |||||||| Sbjct 7460 TGTAGTTGATAGTCAAGGTCGTGTAATTAACACCTGGGCTGATATCATTAACCGTGCTAA 7519 Query 178775 TCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 || || |||||||| ||||| || || || || || |||||||| || || Sbjct 7520 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 7570 >seq582 Length=29683 Score = 504 bits (558), Expect = 9e-138 Identities = 710/991 (72%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | |||| || || || ||||| ||||||||||| || | || Sbjct 24955 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 25014 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | ||| | || |||||| |||| || ||| | ||||| || | Sbjct 25015 TTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCAT 25074 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTTA-CGGCAGC 179410 |||| ||||| || | || ||||| ||| | || || ||| | ||||||| | ||||| Sbjct 25075 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGC 25132 Query 179411 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 179470 || || || |||||| || | | | || ||| | | |||| ||||||||||| | Sbjct 25133 GGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGC 25192 Query 179471 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 179530 || ||| |||| || ||||| ||| | || || || |||| |||||| ||||| || Sbjct 25193 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCA 25252 Query 179531 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 179589 ||||| ||||| || || ||||| ||| | | || || ||||||||||| ||| | Sbjct 25253 TGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCA 25312 Query 179590 GTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTT 179649 | | | ||||| ||||| || || || |||||||| |||||||| || || ||| | Sbjct 25313 ATTGC-GCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 25371 Query 179650 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 179709 |||| || ||||| || || ||||| ||||||||| || || |||||||| || | Sbjct 25372 TCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAG 25431 Query 179710 CGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCC 179769 | || || || ||| | || || |||| || || || ||||||||||| ||||| || | Sbjct 25432 CTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTC 25491 Query 179770 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTA 179829 |||||||||||||||| ||| || | || | || ||||| | ||||| ||||| | || Sbjct 25492 ATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTA 25551 Query 179830 CTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 179889 ||||||| ||||| || | ||| ||||| || |||||||| || ||| ||| | Sbjct 25552 CTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACC 25611 Query 179890 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 179949 | || || | ||||| |||||||| ||||| || || |||||||| ||||| || |||| Sbjct 25612 CAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 25671 Query 179950 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180009 | || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 25672 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 25731 Query 180010 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180069 ||| |||||| || |||| | | ||||| || | ||||| ||||| || | Sbjct 25732 CCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATG 25791 Query 180070 ATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCA 180129 | ||||| ||||| ||| | ||||| |||||||| || ||||| || |||||||||| Sbjct 25792 ACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCA 25851 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATG 180189 | || ||||| | || ||||| | ||||| ||| |||| | ||||| || |||| Sbjct 25852 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 25911 Query 180190 AGTCATTCGTATTCCCAGAAGAAGTTCTGCC 180220 | | ||||||| || || ||||| || Sbjct 25912 AAAACCTTATATTCCCTGAGGAGGTTCTACC 25942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605892640147200