Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq391 706 0.0 seq582 491 6e-134 >seq391 Length=7892 Score = 706 bits (782), Expect = 0.0 Identities = 753/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| | ||||| ||||||||| | ||||| || || | || |||||||| || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || | ||| | ||||| |||| || || | |||||| | |||||||| Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTCC 6712 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || ||||| ||| |||| || || | || |||||||| Sbjct 6713 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 6772 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 || || || ||||| || ||||| |||| || ||||| | ||||| || || || Sbjct 6773 TATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAAT 6832 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 ||||||||| |||||| | ||||||||| | || || ||||||||||| |||| | || Sbjct 6833 CTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGT 6892 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | |||||| | |||| || || || |||||||||||||||||| | || ||| Sbjct 6893 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 6952 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 ||| ||||||||||||||||| |||||| ||| || || ||||| || || || || Sbjct 6953 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGC 7012 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| ||| || |||| || |||||||||| ||| |||||||||||| || || || Sbjct 7013 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7072 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 | ||| || || |||| |||| | || ||||| || |||||||||||||| |||||||| Sbjct 7073 CTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 7132 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 || |||||| | ||||| |||||||| ||||| || || || || ||||| ||||| || Sbjct 7133 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 7192 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||| |||| |||| || | | | || | |||||||| || ||| || ||| | | Sbjct 7193 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 |||||| ||||||||||| ||||| || || ||||| || ||||||||||| || |||| Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 |||| |||||||||| |||||| || ||||| ||||||||| | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 |||||||||| || |||| || |||||||||||| | ||| |||| |||||||| || | Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| || ||||| ||||||||||| || | ||||| ||||||||||||| | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 ||||||| || | | ||||||||| ||||| |||||||| ||||| || ||||||| Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCT 184182 |||| ||||||||||| ||| | |||||| Sbjct 7552 CTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 491 bits (544), Expect = 6e-134 Identities = 715/1005 (71%), Gaps = 4/1005 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || ||||| || |||||||| || | || | Sbjct 24955 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 25014 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 25015 TTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCAT 25074 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||||||| || ||||| |||||| | || || ||| ||||| | || ||||| Sbjct 25075 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGC-AATTTCTTAACCGCAGCG 25133 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || ||||||||| | | | | || ||| | | |||| ||||||||||| | Sbjct 25134 GTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCA 25193 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||| ||| | | || |||| ||| | || || || |||| ||| || || || || Sbjct 25194 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCAT 25253 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 || || || || || |||||||| ||| | || ||||| ||| | ||| ||| | Sbjct 25254 GGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAA 25313 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || |||||||| || ||||| |||||| |||||| Sbjct 25314 T-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 25372 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 ||| || || || | || ||||| ||||| || || || ||||| || ||||| Sbjct 25373 CCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGC 25432 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||||||||| | | || | ||||| || || ||||||||| |||| ||||| || Sbjct 25433 TATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCA 25492 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | | || | ||||||||| | || || ||||||| ||| Sbjct 25493 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 25552 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 ||||||||||||| | | ||| ||||| || ||||| |||||| || || | | Sbjct 25553 TGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 25612 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| ||||| || || ||| | || ||||| || ||||| Sbjct 25613 AACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTT 25672 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || | Sbjct 25673 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 25732 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 ||| | |||| | | |||| | | ||||| || | ||||| ||||| ||||| Sbjct 25733 CGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGA 25792 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 ||| || ||||| | | ||||| || |||||||| || || || ||||| ||||| Sbjct 25793 CTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAA 25852 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || || |||||| | ||||| |||||||| | ||||| || ||||| Sbjct 25853 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 25912 Query 186929 AAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 |||| || |||| ||||| || || | || | || |||||||| Sbjct 25913 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621950340412800