Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq391 710 0.0 seq582 556 1e-153 >seq391 Length=7892 Score = 710 bits (786), Expect = 0.0 Identities = 754/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| || || || ||| | || |||| ||||| || || || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 163988 ATGATTCCCTGCC-TGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 |||| ||||| || | || | || ||| | ||| || || || |||||||| | ||||| Sbjct 6654 ATGA-TCCCTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATAGCTGCTC 6711 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | || ||||||| Sbjct 6712 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 6771 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || || |||||| |||| ||| ||||| ||||| || ||||||| ||||| | Sbjct 6772 ATATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAA 6831 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 |||||||||| ||| | || || ||| | ||||| |||||||||| |||| | | Sbjct 6832 TCTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCG 6891 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| ||||||||||||||||||||| || || Sbjct 6892 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 6951 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || ||||| || || || || | || Sbjct 6952 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7011 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || |||| || |||||||||| || ||||||| |||||||| || | Sbjct 7012 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7071 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 ||||||| || ||||||| ||| | || ||||||||||||||||||||||| ||||||| Sbjct 7072 TCTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACC 7131 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| | Sbjct 7132 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 7191 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| || | | || ||||| |||||||| || ||| | | Sbjct 7192 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || |||||||| || ||||| ||||| |||| Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 |||| |||| |||||||| ||| ||||||||||| ||||| | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || |||||||| ||||||| |||||||||||| |||| |||| || ||||| |||| Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 |||| |||||||||||||||||||| || | | ||| |||| |||||||| | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 ||||||| || | | ||||||||| || || |||||||| ||||| || ||||||| Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCT 164914 |||| ||||||||||| ||| | |||||| Sbjct 7552 CTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 556 bits (616), Expect = 1e-153 Identities = 723/993 (73%), Gaps = 6/993 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || ||||||||||||||||| || |||||||| || | || ||||| ||||||| | Sbjct 24972 AGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCTTATTTC 25031 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 25032 GCCTTAGGAGGTTGGTTTACGGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 25091 Query 165300 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAG 165357 || ||||| ||| | | ||| ||||| |||||| || || || ||||||||||| || Sbjct 25092 GCCAGTTCTTATTTGGAAGGCTGCAA--TTTCTTAACCGCAGCGGTTTCTACTCCTGCTA 25149 Query 165358 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 165417 | | | | || ||| | || | |||||||||||||| | |||||||| || | | Sbjct 25150 ATAGTTTAGCACACTCTTTATTGTTACTATGGGGTCCTGAAGCACAAGGGGATTTTACTC 25209 Query 165418 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 165477 | ||||| ||| | || || || |||||||| || || || || || || || ||||| | Sbjct 25210 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTTGCTCTTCATGGTGCTTTCGCACTAA 25269 Query 165478 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAAT 165536 ||||||| ||| | || ||||| ||||| || ||| || || | | || ||||| ||| Sbjct 25270 TAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGATCTGTTCAAT-TGCGCCCTTATAAT 25328 Query 165537 GCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTG 165596 || || || ||||||||||| |||||||| || ||| ||| || || || ||||| | Sbjct 25329 GCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCATTA 25388 Query 165597 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656 || || || ||||| || ||||| || || || ||||| || || ||||| | Sbjct 25389 GGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTAGATTCATT 25448 Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716 || || | |||||||| ||||||||||||||||| || ||||| |||||||| || || Sbjct 25449 CTATTTTTTCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGAGTTGCC 25508 Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776 ||| | || |||| || |||| | || |||||||||| ||| ||||| |||||||| Sbjct 25509 GGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 25568 Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836 | ||| |||||||| ||||| || ||| || ||| | ||||| | || ||| Sbjct 25569 TTTGAGGATGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACTCAAGCTGAAGAA 25628 Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896 |||||||| ||||| || |||||||| || ||||| || || ||||| ||||||| | Sbjct 25629 ACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 25688 Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956 ||||| |||||| | || ||||||||| | ||||| || || | || | |||| ||| Sbjct 25689 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGT 25748 Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016 || |||| | | ||||| || | || || ||||| ||||| || || || ||||| Sbjct 25749 GCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 25808 Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076 || | || ||||| ||||| || |||||||| ||||| || ||||| || ||| | || Sbjct 25809 ATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAAC 25868 Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136 ||||| | ||||| ||| |||| || ||| || |||||||| ||| || | |||||| Sbjct 25869 GAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCT 25928 Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || || | || | || ||||| |||||| Sbjct 25929 GAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 25961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557546772700800