Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amaranthus_20tuberculatus_20[genbank_20GCA_5F000180655.1_202009-06- 22] 15,440 sequences; 4,347,977 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq391 691 0.0 seq582 542 3e-149 >seq391 Length=7892 Score = 691 bits (766), Expect = 0.0 Identities = 750/989 (76%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| ||| | || ||||| || |||| ||||| ||||| || Sbjct 6594 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATCGGATGGTTTGGTGTTTTG 6653 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || ||||| || || | || ||| | |||||||| Sbjct 6654 ATGATCCCTACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATAGCTGCTCC 6712 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 6713 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 6772 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||| |||||| || ||||| ||||| |||||||| | ||||| || || || Sbjct 6773 TATTATTTCGGGTGCTATTATTCCTACTTCTGCAGCTATTGGGTTGCACTTTTACCCAAT 6832 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||| || || | ||||||||| | |||||||||||||||| |||| | | Sbjct 6833 CTGGGAAGCGGCATCAGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAACTAATCGT 6892 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 6893 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 6952 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| || ||||| || || || || |||| Sbjct 6953 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGC 7012 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||| ||| | | || || |||||||||| || ||||| | |||||| || || || Sbjct 7013 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7072 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | ||| || ||||||| ||| | || ||||| || |||||||||||||| |||||||| Sbjct 7073 CTCTGGTACTTTCAACTTTATGATCGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 7132 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || |||||||| || || |||||||| || || || || || || ||||| ||||| || Sbjct 7133 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 7192 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 ||| |||| |||| || | | | || | |||||||| || || ||| | ||| | | Sbjct 7193 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAACGAAG 7251 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| ||||||||||| ||||| || || |||||||| |||||||||||||| || | Sbjct 7252 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAACATCGTAGCTGCTCATGGTTATTTTG 7311 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 |||| ||||||||||||| || ||||||||||| ||||| | ||||||||| | | Sbjct 7312 GTCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTAG 7371 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || |||||||| ||||||| ||||| |||||| | ||| |||| || ||||| |||| Sbjct 7372 CTGCTTGGCCTGTAATCGGTATTTGGTTTACTGCTTTGGGTATTAGTACTATGGCTTTCA 7431 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 |||| |||||||||||||||||||| || | | |||||||| || || | |||| Sbjct 7432 ACCTAAACGGTTTCAACTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAACA 7491 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 ||||||| || | | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 7492 CCTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 7551 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCT 178584 |||| ||||||||||| ||| | |||||| Sbjct 7552 CTCATAACTTCCCTCTAGACTTAGCTGCT 7580 >seq582 Length=29683 Score = 542 bits (600), Expect = 3e-149 Identities = 730/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | ||||||||| | | | || || ||||||||||| |||||||| ||| Sbjct 24945 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGT 25004 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| |||||| | || | || |||||| | ||||| ||||| || Sbjct 25005 CTATTGCTCTTTCCTTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACGGGTACAACCTTT 25064 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || |||||||| || || | || ||| ||| | || || || |||||| | Sbjct 25065 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGCTGCAATTTCTTA 25124 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || || || || || ||||||||| | | | | ||| || || | | ||||||||| Sbjct 25125 ACCGCAGCGGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTATTGTTACTATGGGGT 25184 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || || ||||| || ||| ||| | || || || ||| |||| || Sbjct 25185 CCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTCGTT 25244 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || || || ||||| ||||| || |||||||| ||| | || ||||| ||| | || || Sbjct 25245 GCTCTTCATGGTGCTTTCGCACTAATAGGTTTTATGTTACGTCAGTTCGAACTTGCTCGA 25304 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct 25305 TCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 25363 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 ||||| || || || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 25364 TTCTGTATTCCTAATTTATCCATTAGGTCAGTCTGGTTGGTTTTTTGCACCTAGTTTTGG 25423 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || ||||| || || | ||| | || || | || || || || ||||||||||| || Sbjct 25424 TGTAGCAGCTATATTTAGATTCATTCTATTTTTTCAAGGGTTTCATAACTGGACGCTGAA 25483 Query 179378 CCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCA 179437 ||| || || |||||||| || || ||| | |||||| || |||| || || ||||| Sbjct 25484 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGCGCTATTCA 25543 Query 179438 TGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGC 179497 ||||||||| ||||| || || | ||||| || |||| ||||||||||| ||| Sbjct 25544 TGGTGCTACTGTAGAAAATACTTTATTTGAGGATGGTGATGGGGCAAATACATTCCGGGC 25603 Query 179498 ATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTC 179557 || | || || |||| || || || ||||| |||||||| || ||||| || ||||| Sbjct 25604 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 25663 Query 179558 TCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGT 179617 || |||||||| | || || |||||| |||||| |||||||||||||||| ||||| Sbjct 25664 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 25723 Query 179618 TCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAG 179677 || || | ||| | |||| | |||| | | ||||| || | ||||| | Sbjct 25724 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTACG 25783 Query 179678 AGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTT 179737 || |||||||| ||||| || || ||| | || || || |||||||| || || || || Sbjct 25784 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTT 25843 Query 179738 CTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCA 179797 ||| ||||| || || || || || |||||| | |||||||||||||| | ||||| Sbjct 25844 CTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 25903 Query 179798 ACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 25904 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 25957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596192112710400