Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq715 140 7e-28
seq318 122 2e-22
seq12227 104 5e-17
seq4121 104 5e-17
seq1276 104 5e-17
seq1167 104 5e-17
seq887 104 5e-17
seq270 104 5e-17
seq267 104 5e-17
seq257 104 5e-17
seq21 104 5e-17
seq420 102 2e-16
>seq715
Length=381403
Score = 140 bits (154), Expect = 7e-28
Identities = 588/903 (65%), Gaps = 38/903 (4%)
Strand=Plus/Minus
Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810
||||| |||||| |||||||| || || || ||||| |||||||||||||| | |||
Sbjct 115826 TCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCT 115767
Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGTGAGAAA 229869
| |||||||| | ||||| || | || | ||| || || ||||| ||
Sbjct 115766 CCTTCTGGACAGCCGAGGAGGT-CGACTTGTCCCAGGACCTCCCTCACTGG-------AA 115715
Query 229870 CTCAATGAC----GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTC 229925
||| | || ||||| || || ||||||| ||| |||| | || ||||| | |||
Sbjct 115714 CTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTC 115655
Query 229926 CGATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAAC-GGTTCCA 229983
|||||| || || | |||||||| || | || || || | || | ||| |
Sbjct 115654 CGATGGCATCGTCCTCGAAAATCTCGCCGG--AAGGTTCATGAAGGAGATCCAGGTGGCG 115597
Query 229984 GAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATAT 230043
||||| || || || | | ||| | || ||| || || ||||| |||
Sbjct 115596 GAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTAT 115537
Query 230044 GCTCTGCTTATCGACGCGCTTATTTCCGACGAG--CAA-GAACGGAACGAGCTTTTTGAT 230100
||| || |||| | || || | || ||| || |||| | || || |
Sbjct 115536 AGTCTCCTGCTCGAAACC--TACGTCA-AGGATTCCAATGAGAAGAACAAACTCTTCCAC 115480
Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160
||||| |||| | ||| || || || ||||| ||||||| | ||||||| | ||
Sbjct 115479 GCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA- 115421
Query 230161 CCTGGT--AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGT 230218
| | | || ||||| || ||||| ||| |||| | | || || || || ||| | |
Sbjct 115420 -CGGATCCAAGTCGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCT 115362
Query 230219 TTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCG 230278
| || || || |||||||| || |||||| || || ||| |||||||||| |
Sbjct 115361 TCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGGT-TGATGCCTGGGTTGA 115303
Query 230279 GTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA 230338
| | || |||||||| ||| || || || || || || | |||| || ||||
Sbjct 115302 CTTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCG-CGTGCTTG 115244
Query 230339 -TGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAGACG-GTCAAACAAATCATTACAG 230395
| || | ||| || ||||| | || || ||| |||| ||| | |
Sbjct 115243 CTCTACGGATTGCTGAGGATGAAGCTTAGCAAG-GA-ACGAGTCAGGGGGATCGTGCGCG 115186
Query 230396 AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCA 230455
| || || || | ||| | |||||| | || |||||| | || || ||| || ||| |
Sbjct 115185 ACGCGGTGGATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTG-CGCTTTGGTGGGA 115127
Query 230456 -TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514
|||||| |||||||||| | ||||| ||||| ||||| || || || | | | ||
Sbjct 115126 ATGAACGGTGAACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCT 115067
Query 230515 CTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCG 230574
| || |||| | ||||||| ||| || |||| | |||||| | ||||||
Sbjct 115066 TTAGGGTACGGTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCG 115007
Query 230575 CTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
| ||||||||||| || |||||||| ||| | ||| |||| || |||| | | | ||||
Sbjct 115006 TTGCAAGGGAAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCAGAAGGCGGCTGTG 114947
Query 230635 ATG 230637
|||
Sbjct 114946 ATG 114944
>seq318
Length=266665
Score = 122 bits (134), Expect = 2e-22
Identities = 568/885 (64%), Gaps = 25/885 (3%)
Strand=Plus/Minus
Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809
|||| | |||||| ||||| || ||| | || ||||| |||||||||||||| | |||
Sbjct 56460 TTCTGTATGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCC 56401
Query 229810 ACTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAG 229866
| |||||||| ||||||| || ||||| | || ||| || | ||||| ||
Sbjct 56400 TCCTTCTGGACTGCTGAGGAGGTCGACCTCT---CCCAGGACCTCCGCCACTGG---GAC 56347
Query 229867 AAACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926
|||| || | ||| || ||||| |||| ||| |||| | ||| ||||| | ||||
Sbjct 56346 TCCCTCACCGATGGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCC 56287
Query 229927 GATGGTATTGTGATGGAAAATC-TGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGA 229985
|| || || || | || || | ||| | | ||| | ||| || ||| | ||
Sbjct 56286 GACGGAATCGTCCTCGAGAACCTTGCTG-CTCGCTTCATGAAGGAGGTCCAGGTCGCGGA 56228
Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041
|| || || |||| | ||| | |||| | ||| || || || || |
Sbjct 56227 AGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGA--GAA--CATTCACTCCGAGATGT 56172
Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATG 230101
| || || |||| | ||| ||| | || |||| | || || |||
Sbjct 56171 ACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATG 56112
Query 230102 CCATTGAAAACAT-CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160
|||| || | | ||| || || | || ||||| | ||||||| || ||| | |
Sbjct 56111 CCATCGACATGGTGCCCTGC-GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGC 56053
Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220
|| | || |||||||| || |||| | | || || || || ||| | ||
Sbjct 56052 GGTGCCGAGAGCTTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTC 55993
Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280
||||||||||||||||| || || |||||| ||| || | ||||| || ||
Sbjct 55992 TCCGGGAGTTTCTGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACC 55933
Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-AT 230339
| || ||||| || ||| || ||||||||||| || | ||| || |||| |
Sbjct 55932 TTCTCGAACGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTC-GCTTGCTTGCT 55874
Query 230340 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGC 230399
|| | ||| ||| ||||| ||| || || ||| ||| || ||
Sbjct 55873 CTACGAACTGCTGAAGACGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTAGGGATGC 55814
Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGA 230458
|| || | ||| | |||||| | || ||||| | || || |||||| | |||||||
Sbjct 55813 GGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTG-CGCCTTGGTGGGCATGA 55755
Query 230459 ACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTG 230518
||| || |||||| | ||||||||||| ||||| || || ||| | | | || || |
Sbjct 55754 ACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTGGGGGCGCTCG 55695
Query 230519 GTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTC 230578
| | || ||| | ||| ||||| |||| | |||||||| || |||||||
Sbjct 55694 GCTGCGGGAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTC 55635
Query 230579 AAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
| ||||||||||| |||||||| || | ||| | || || ||||
Sbjct 55634 AGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTACCAGA 55590
>seq12227
Length=2446
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 2432 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2373
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2372 CCCACGGTGGGC 2361
>seq4121
Length=42422
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 9152 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9211
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 9212 CCCACGGTGGGC 9223
>seq1276
Length=226628
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 57891 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 57950
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 57951 CCCACGGTGGGC 57962
>seq1167
Length=142977
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 26194 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26135
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 26134 CCCACGGTGGGC 26123
>seq887
Length=362991
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 336283 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 336224
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 336223 CCCACGGTGGGC 336212
>seq270
Length=391037
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 363223 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 363164
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 363163 CCCACGGTGGGC 363152
>seq267
Length=294602
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 62905 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 62964
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 62965 CCCACGGTGGGC 62976
>seq257
Length=292223
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 56821 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56880
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 56881 CCCACGGTGGGC 56892
>seq21
Length=601505
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 406860 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 406801
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 406800 CCCACGGTGGGC 406789
>seq420
Length=385775
Score = 102 bits (112), Expect = 2e-16
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||||||||||||||||||||||||| || || |||| || ||||||||||||||||||
Sbjct 7248 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7189
Query 165770 CCCACGATGGG 165780
|||||| ||||
Sbjct 7188 CCCACGGTGGG 7178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057447636468470
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