Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq715 140 7e-28 seq318 122 2e-22 seq12227 104 5e-17 seq4121 104 5e-17 seq1276 104 5e-17 seq1167 104 5e-17 seq887 104 5e-17 seq270 104 5e-17 seq267 104 5e-17 seq257 104 5e-17 seq21 104 5e-17 seq420 102 2e-16 >seq715 Length=381403 Score = 140 bits (154), Expect = 7e-28 Identities = 588/903 (65%), Gaps = 38/903 (4%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| |||||| |||||||| || || || ||||| |||||||||||||| | ||| Sbjct 115826 TCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCT 115767 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGTGAGAAA 229869 | |||||||| | ||||| || | || | ||| || || ||||| || Sbjct 115766 CCTTCTGGACAGCCGAGGAGGT-CGACTTGTCCCAGGACCTCCCTCACTGG-------AA 115715 Query 229870 CTCAATGAC----GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTC 229925 ||| | || ||||| || || ||||||| ||| |||| | || ||||| | ||| Sbjct 115714 CTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTC 115655 Query 229926 CGATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAAC-GGTTCCA 229983 |||||| || || | |||||||| || | || || || | || | ||| | Sbjct 115654 CGATGGCATCGTCCTCGAAAATCTCGCCGG--AAGGTTCATGAAGGAGATCCAGGTGGCG 115597 Query 229984 GAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATAT 230043 ||||| || || || | | ||| | || ||| || || ||||| ||| Sbjct 115596 GAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTAT 115537 Query 230044 GCTCTGCTTATCGACGCGCTTATTTCCGACGAG--CAA-GAACGGAACGAGCTTTTTGAT 230100 ||| || |||| | || || | || ||| || |||| | || || | Sbjct 115536 AGTCTCCTGCTCGAAACC--TACGTCA-AGGATTCCAATGAGAAGAACAAACTCTTCCAC 115480 Query 230101 GCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 ||||| |||| | ||| || || || ||||| ||||||| | ||||||| | || Sbjct 115479 GCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA- 115421 Query 230161 CCTGGT--AAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGT 230218 | | | || ||||| || ||||| ||| |||| | | || || || || ||| | | Sbjct 115420 -CGGATCCAAGTCGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCT 115362 Query 230219 TTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCG 230278 | || || || |||||||| || |||||| || || ||| |||||||||| | Sbjct 115361 TCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGGT-TGATGCCTGGGTTGA 115303 Query 230279 GTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA 230338 | | || |||||||| ||| || || || || || || | |||| || |||| Sbjct 115302 CTTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCG-CGTGCTTG 115244 Query 230339 -TGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAGACG-GTCAAACAAATCATTACAG 230395 | || | ||| || ||||| | || || ||| |||| ||| | | Sbjct 115243 CTCTACGGATTGCTGAGGATGAAGCTTAGCAAG-GA-ACGAGTCAGGGGGATCGTGCGCG 115186 Query 230396 AAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCA 230455 | || || || | ||| | |||||| | || |||||| | || || ||| || ||| | Sbjct 115185 ACGCGGTGGATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTG-CGCTTTGGTGGGA 115127 Query 230456 -TGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514 |||||| |||||||||| | ||||| ||||| ||||| || || || | | | || Sbjct 115126 ATGAACGGTGAACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCT 115067 Query 230515 CTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCG 230574 | || |||| | ||||||| ||| || |||| | |||||| | |||||| Sbjct 115066 TTAGGGTACGGTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCG 115007 Query 230575 CTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 | ||||||||||| || |||||||| ||| | ||| |||| || |||| | | | |||| Sbjct 115006 TTGCAAGGGAAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCAGAAGGCGGCTGTG 114947 Query 230635 ATG 230637 ||| Sbjct 114946 ATG 114944 >seq318 Length=266665 Score = 122 bits (134), Expect = 2e-22 Identities = 568/885 (64%), Gaps = 25/885 (3%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||| ||||| || ||| | || ||||| |||||||||||||| | ||| Sbjct 56460 TTCTGTATGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCC 56401 Query 229810 ACTTTCTGGACCACTGAGGAAGT--TCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAG 229866 | |||||||| ||||||| || ||||| | || ||| || | ||||| || Sbjct 56400 TCCTTCTGGACTGCTGAGGAGGTCGACCTCT---CCCAGGACCTCCGCCACTGG---GAC 56347 Query 229867 AAACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCC 229926 |||| || | ||| || ||||| |||| ||| |||| | ||| ||||| | |||| Sbjct 56346 TCCCTCACCGATGGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCC 56287 Query 229927 GATGGTATTGTGATGGAAAATC-TGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGA 229985 || || || || | || || | ||| | | ||| | ||| || ||| | || Sbjct 56286 GACGGAATCGTCCTCGAGAACCTTGCTG-CTCGCTTCATGAAGGAGGTCCAGGTCGCGGA 56228 Query 229986 GGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAAT 230041 || || || |||| | ||| | |||| | ||| || || || || | Sbjct 56227 AGCCCGAGCCTTCTATGGCTTCCAGATCGCCATTGA--GAA--CATTCACTCCGAGATGT 56172 Query 230042 ATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATG 230101 | || || |||| | ||| ||| | || |||| | || || ||| Sbjct 56171 ACAGCCTCCTCCTCGAGACCTATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATG 56112 Query 230102 CCATTGAAAACAT-CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAA 230160 |||| || | | ||| || || | || ||||| | ||||||| || ||| | | Sbjct 56111 CCATCGACATGGTGCCCTGC-GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGC 56053 Query 230161 CCTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTT 230220 || | || |||||||| || |||| | | || || || || ||| | || Sbjct 56052 GGTGCCGAGAGCTTCGCCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTC 55993 Query 230221 TCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGT 230280 ||||||||||||||||| || || |||||| ||| || | ||||| || || Sbjct 55992 TCCGGGAGTTTCTGCGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACC 55933 Query 230281 CTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-AT 230339 | || ||||| || ||| || ||||||||||| || | ||| || |||| | Sbjct 55932 TTCTCGAACGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTC-GCTTGCTTGCT 55874 Query 230340 GTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGC 230399 || | ||| ||| ||||| ||| || || ||| ||| || || Sbjct 55873 CTACGAACTGCTGAAGACGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTAGGGATGC 55814 Query 230400 AGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGA 230458 || || | ||| | |||||| | || ||||| | || || |||||| | ||||||| Sbjct 55813 GGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTG-CGCCTTGGTGGGCATGA 55755 Query 230459 ACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTG 230518 ||| || |||||| | ||||||||||| ||||| || || ||| | | | || || | Sbjct 55754 ACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTGGGGGCGCTCG 55695 Query 230519 GTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTC 230578 | | || ||| | ||| ||||| |||| | |||||||| || ||||||| Sbjct 55694 GCTGCGGGAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTC 55635 Query 230579 AAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 | ||||||||||| |||||||| || | ||| | || || |||| Sbjct 55634 AGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTACCAGA 55590 >seq12227 Length=2446 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2432 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2373 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2372 CCCACGGTGGGC 2361 >seq4121 Length=42422 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 9152 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9211 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 9212 CCCACGGTGGGC 9223 >seq1276 Length=226628 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 57891 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 57950 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 57951 CCCACGGTGGGC 57962 >seq1167 Length=142977 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 26194 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 26135 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 26134 CCCACGGTGGGC 26123 >seq887 Length=362991 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 336283 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 336224 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 336223 CCCACGGTGGGC 336212 >seq270 Length=391037 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 363223 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 363164 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 363163 CCCACGGTGGGC 363152 >seq267 Length=294602 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 62905 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 62964 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 62965 CCCACGGTGGGC 62976 >seq257 Length=292223 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 56821 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 56880 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 56881 CCCACGGTGGGC 56892 >seq21 Length=601505 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 406860 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 406801 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 406800 CCCACGGTGGGC 406789 >seq420 Length=385775 Score = 102 bits (112), Expect = 2e-16 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7248 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7189 Query 165770 CCCACGATGGG 165780 |||||| |||| Sbjct 7188 CCCACGGTGGG 7178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057447636468470