Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq318 179 4e-40 seq715 170 2e-37 >seq318 Length=266665 Score = 179 bits (198), Expect = 4e-40 Identities = 298/428 (70%), Gaps = 3/428 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||| ||||| |||| |||||||||| ||| | |||||| || || |||| Sbjct 55880 CAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGT 55939 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || || ||||| | ||| ||||||||| ||| ||| || ||||| Sbjct 55940 CCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAA 55999 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||||||| | || |||||||| | || |||||| | || || | | ||| Sbjct 56000 ATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC--CGA 56057 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 |||| || | |||| || || || | ||| | ||| || | | || ||||| | Sbjct 56058 -TCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGG 56116 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | ||| | || || | ||| | ||||| || |||| ||| ||||||||||| Sbjct 56117 AAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTACATC 56176 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 |||||||| |||||||| ||||| ||||| || || || ||| |||||||||||| | Sbjct 56177 TCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCGACC 56236 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || || ||| ||| || | || || || ||| ||||| |||||| |||||| Sbjct 56237 TGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGCGGCG 56296 Query 17384 AAAAACGC 17391 || || || Sbjct 56297 AAGAAAGC 56304 >seq715 Length=381403 Score = 170 bits (188), Expect = 2e-37 Identities = 385/575 (67%), Gaps = 4/575 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| || | || || |||| ||| | ||||| || || |||||| Sbjct 115248 CACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAAC 115307 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || || || || ||||||||||||||| ||| ||||| ||||| Sbjct 115308 CCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAA 115366 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||| ||| | || ||||||| | || || ||| ||| | | | || || Sbjct 115367 ATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT--CG- 115423 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||||||| || ||||||| || || | || | ||| || |||||| ||||| | Sbjct 115424 ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGG 115483 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | ||| | || || | || | | || || |||| || || || ||||| Sbjct 115484 AAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATACATC 115543 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATT 17323 || ||||| |||||||| ||||| ||||| || ||||| ||| || || ||||| | Sbjct 115544 TCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACC 115603 Query 17324 TGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCG 17383 || | ||| ||| | | | || ||||||||| |||||||| ||| |||||| Sbjct 115604 TGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCG 115663 Query 17384 AAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCC 17443 || || || | | || | ||||| | ||||| | || ||| | ||||| Sbjct 115664 AAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCAGTGA 115723 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTA 17503 | || | ||| | || || || |||| ||||| || ||| ||||||| || Sbjct 115724 GGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTG 115783 Query 17504 TACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||| | ||| || || |||||| || ||||| Sbjct 115784 TACATCTCCCAGATTTCCGGGTATTGGATCGGGAA 115818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517365953452920