Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq715 116 4e-21
seq318 111 2e-19
>seq715
Length=381403
Score = 116 bits (128), Expect = 4e-21
Identities = 245/359 (68%), Gaps = 10/359 (3%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|||||||| ||||| || || ||||| |||| ||| | ||||| || ||||| |||
Sbjct 115248 CACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAAC 115307
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC-GAAAAGAA 16320
|| ||||| || || || || ||||| |||||||| ||| | | || || |||||
Sbjct 115308 CCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAA 115365
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATTA 16378
|| ||||| || | || || |||| | || |||||| ||| | | ||| |
Sbjct 115366 AATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT---- 115421
Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438
||| |||||||| | |||| || || || | | | || || |||||| |||||
Sbjct 115422 CGA-TCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480
Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498
| || | ||| | || || | ||| | | || || || | ||| | ||| |||
Sbjct 115481 TGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATAC 115540
Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557
|| || ||||| |||||||| ||||| ||||| || || || ||| |||||||||||
Sbjct 115541 ATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599
>seq318
Length=266665
Score = 111 bits (122), Expect = 2e-19
Identities = 273/411 (66%), Gaps = 5/411 (1%)
Strand=Plus/Plus
Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261
|| ||||||||||| ||||| || ||||||| ||| | |||||| || || || |
Sbjct 55880 CAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGT 55939
Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320
|| |||||| || || ||||| | |||||||||||| ||| || ||| || |||||
Sbjct 55940 CCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGC-GCAGAAACTCCCGGAGAAGAA 55998
Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380
|| ||||| || | || || ||||| | || || ||| | | || | |
Sbjct 55999 AATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCT---CTCGGCACCGCC 56055
Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440
||||| || | |||| || || || | || | || || | | || ||||| |
Sbjct 56056 GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATG 56115
Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500
|| | ||| | || || | || | ||||| || || | || | ||||||||
Sbjct 56116 GAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTACAT 56175
Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560
|| ||||| |||||||| ||||| ||||| || ||||||||| ||| || ||||| |
Sbjct 56176 CTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCGAC 56235
Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611
|| || ||| || || | || |||||||| ||||| |||||
Sbjct 56236 CTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTC 56286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511236881669080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |