Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq715 116 4e-21 seq318 111 2e-19 >seq715 Length=381403 Score = 116 bits (128), Expect = 4e-21 Identities = 245/359 (68%), Gaps = 10/359 (3%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||| ||||| || || ||||| |||| ||| | ||||| || ||||| ||| Sbjct 115248 CACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAAC 115307 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCC-GAAAAGAA 16320 || ||||| || || || || ||||| |||||||| ||| | | || || ||||| Sbjct 115308 CCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAA 115365 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACG--TAGCATCTTTATTA 16378 || ||||| || | || || |||| | || |||||| ||| | | ||| | Sbjct 115366 AATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT---- 115421 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 ||| |||||||| | |||| || || || | | | || || |||||| ||||| Sbjct 115422 CGA-TCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480 Query 16439 TTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 | || | ||| | || || | ||| | | || || || | ||| | ||| ||| Sbjct 115481 TGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATAC 115540 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 || || ||||| |||||||| ||||| ||||| || || || ||| ||||||||||| Sbjct 115541 ATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599 >seq318 Length=266665 Score = 111 bits (122), Expect = 2e-19 Identities = 273/411 (66%), Gaps = 5/411 (1%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||||||||| ||||| || ||||||| ||| | |||||| || || || | Sbjct 55880 CAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGT 55939 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAA 16320 || |||||| || || ||||| | |||||||||||| ||| || ||| || ||||| Sbjct 55940 CCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGC-GCAGAAACTCCCGGAGAAGAA 55998 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || ||||| || | || || ||||| | || || ||| | | || | | Sbjct 55999 AATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCT---CTCGGCACCGCC 56055 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||| || | |||| || || || | || | || || | | || ||||| | Sbjct 56056 GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATG 56115 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 || | ||| | || || | || | ||||| || || | || | |||||||| Sbjct 56116 GAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTACAT 56175 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 || ||||| |||||||| ||||| ||||| || ||||||||| ||| || ||||| | Sbjct 56176 CTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGCGAC 56235 Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || || ||| || || | || |||||||| ||||| ||||| Sbjct 56236 CTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTC 56286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511236881669080