Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq318 154 2e-32 seq715 132 6e-26 seq2451 114 2e-20 seq1535 100 3e-16 >seq318 Length=266665 Score = 154 bits (170), Expect = 2e-32 Identities = 244/346 (71%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| |||||||||||||||||||||| || |||||||| || || || Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||||| |||||||| || ||||| || ||||| ||||| | |||| || || || | Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC---CGGCGCTGT 24306 ||||||| || || || || || || || || | || | | | |||| | | Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | |||||||| |||||||||| |||||||| || || || |||| | || || | Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 ||| ||||| | ||| || |||| || || | ||| || || | | || || | Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||| || || |||||||| |||||||| || || || || ||||| Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAA 56217 >seq715 Length=381403 Score = 132 bits (146), Expect = 6e-26 Identities = 382/582 (66%), Gaps = 7/582 (1%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || |||||||||||||| || || || |||| || || ||||| || || || Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 24249 | || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| | Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 ||||||| || || || || || || | || | |||| | || | | Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCG--CTCCGCGAACGACTTGGATCC 115419 Query 24310 GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || ||||| || | ||||| || |||||||| | || || |||| || || || || Sbjct 115420 GTCGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGC 115479 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 | ||||| | ||| || ||||| ||| || || || || || | || |||||||| Sbjct 115480 GTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATA 115539 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 ||| || || |||||||| || ||||| || || || ||||| || | |||||| | Sbjct 115540 CATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| | || | || | | | || | |||||| || || || || ||| Sbjct 115600 CACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGC 115659 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 || || || || | || || | || || | ||||| | || || ||||| Sbjct 115660 GGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCA 115719 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | || || | || | || || || || ||||||| || || ||||||||||| Sbjct 115720 GTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTT 115779 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || ||||| | |||||| || | ||||| || || || || Sbjct 115780 CTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq2451 Length=68748 Score = 114 bits (126), Expect = 2e-20 Identities = 189/268 (71%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| |||||||||||||||||||||| || ||||| || || || || Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 |||||| |||||||| || ||||| || ||||| ||||| | || | || || || | Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049 Query 24250 AGAAAATTCCTTCTACTGCCGCA----AAGGCAATAAGTCTTTCTCCATAAC---CGGCG 24302 ||||||| || | || |||| || || || || | || | | | |||| Sbjct 68048 AGAAAATCCCCT----TGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCA 67993 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | ||| |||||||| |||||||||| |||||||| || || || |||| || || Sbjct 67992 CCGTC---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCG 67936 Query 24363 ATAGCATTAAAGAGATAGtttttttCAT 24390 || |||| |||| | ||| || |||| Sbjct 67935 ATGGCATGGGAGAGTTTGTTCTTCTCAT 67908 >seq1535 Length=214281 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 54178 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 54237 |||| |||||| || || | || | ||| || | |||| | || ||||||||||| | Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828 Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 ||| ||||| |||| ||||| || || ||||| || ||| | || ||||| ||| Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 |||||| | || || || || || ||| ||| | || || ||| || ||||| Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708 Query 54358 ATAGATGCCCTCTATACTATCATCCATCAT 54387 ||| || ||||| || ||||||||| |||| Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | || |||||||| || || |||||| | | || | | | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| ||| | || || ||||| | |||||||| || || || | ||| ||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| |||||||| | || | | ||| || | |||||| |||| | Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| || ||||| || | || |||||| || || || || || Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593515511811120