Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4991 140 5e-28 seq1057 105 1e-17 seq1034 104 4e-17 >seq4991 Length=48504 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||||| || ||||||||||| ||| | ||| |||| ||| Sbjct 8818 ATGCAGATTTTTGTCAAGACACTCACGGGCAAAACTATCACTCTGGAGGTTGAGAGC-TC 8760 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || ||||| || || || || || || ||||| ||||| Sbjct 8759 TGACACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCACCAGATCA 8700 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || ||||| | ||||| |||||||| | | || ||||| Sbjct 8699 GCAGAGGCTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGAACACTTGCTGACTATAA 8640 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || || | ||||||||| | ||| | || |||||||| Sbjct 8639 CATTCAAAAGGAGTCGACCCTTCATTTGGTTCTCCGTCTTCGTGGTGGTAT 8589 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || ||||| ||||| ||| | || | || | Sbjct 8590 ATGCAGATTTTTGTCAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAGAGTTCT 8531 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || ||||| || || || || ||||||||||| ||||| Sbjct 8530 GACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATACCACCAGATCAG 8471 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| || || ||| | |||||| | | || | | || || ||| Sbjct 8470 CAAAGACTCATTTTTGCTGGCAAGCAACTTGAGGATGGGAGGACGCTTGCTGACTACAAT 8411 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || |||||||| | || |||| | || | || ||||| || Sbjct 8410 ATTCAGAAGGAATCAACACTTCACCTGGTGCTTCGCCTCCGTGGTGGGAT 8361 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || || || | ||| ||||| | Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| || || || || || || || ||||| Sbjct 9214 GATACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGATCAG 9155 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || ||||| | |||||| | | || ||| || || || Sbjct 9154 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTACAAC 9095 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | |||||||| | || | || ||||| || Sbjct 9094 ATTCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGAAT 9045 Score = 89.7 bits (98), Expect = 8e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || ||||| || || || ||| | ||| | || ||| | Sbjct 8362 ATGCAGATATTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTGGAGAGCTCA 8303 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || |||||||| || || ||||| || || || ||||| Sbjct 8302 -GACACAATTGATAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCCCCGGATCA 8244 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||||||||| || | || ||| | || || || | || || || Sbjct 8243 GCAGAGGTTGATCTTTGCAGGAAAGCAGCTTGAAGATGGACGTACCTTGGCTGACTACAA 8184 Query 124718 TATTCAAAAAGAATCAAC 124735 || || || ||||| || Sbjct 8183 CATCCAGAAGGAATCTAC 8166 >seq1057 Length=141302 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || ||||| || || || | ||| ||||| | Sbjct 137179 ATGCAGATCTTTGTTAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 137120 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| || ||||| || || || || || || ||||||||| Sbjct 137119 GACACCATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCTGATCAA 137060 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || |||||||| | || ||| | | ||| || || Sbjct 137059 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGCCGCACACTTGCAGACTACAAC 137000 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 || || ||||| || ||| |||| | ||| | ||| Sbjct 136999 ATCCAGAAAGAGTCCACTCTGCACCTAGTTCTTCGT 136964 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || || ||||| || || || ||||| || ||||| || ||||| || ||| Sbjct 136639 AAGATTCAGGACAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTAATCTTTGCTGGGAAA 136580 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||||||||||| | | | || ||||| || || || |||||| | || Sbjct 136579 CAGCTCGAGGATAGTCGAACCCTTGCCCACTACAATATCCAGAAGGAGTCAACTCTCCAC 136520 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||| | || ||||| || Sbjct 136519 TTGGTTCTCCGTCTTCGTGGTGGCAT 136494 >seq1034 Length=134858 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || ||||||||||| | ||| ||||| Sbjct 72091 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAAACTATAACACTGGAGGTTGAAAGTTCA 72150 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| || ||||| || || |||||||| || |||||||| Sbjct 72151 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 72210 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || || ||| | |||||| | | || | | || || || Sbjct 72211 CAGAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCAGGACGCTTGCTGACTACAAC 72270 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || |||||| | ||| | ||||||| || Sbjct 72271 ATTCAGAAGGAATCCACCCTTCACTTGGTTCTTCGTCTTAGAGGTGGCAT 72320 Score = 93.3 bits (102), Expect = 6e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| || | || ||||| || ||||| || || || | ||| ||||| || | Sbjct 71863 ATGCAAATCTTCGTGAAAACACTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCA 71922 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| || || || || || || |||||||| Sbjct 71923 -GACACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 71981 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||||||||| || || || | |||||| | || || | | || ||||| Sbjct 71982 GCAGAGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTATAA 72041 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || || || || |||| |||| Sbjct 72042 TATCCAGAAGGAGTCCACCCTGCACCTGGT 72071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755193771779200