Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq4991 140 5e-28
seq1057 105 1e-17
seq1034 104 4e-17
>seq4991
Length=48504
Score = 140 bits (154), Expect = 5e-28
Identities = 171/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || ||| | |||||||| || ||||||||||| ||| | ||| |||| |||
Sbjct 8818 ATGCAGATTTTTGTCAAGACACTCACGGGCAAAACTATCACTCTGGAGGTTGAGAGC-TC 8760
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| ||| | || ||||| || || || || || || ||||| |||||
Sbjct 8759 TGACACCATTGACAATGTGAAGGCCAAAATCCAGGACAAGGAGGGCATCCCACCAGATCA 8700
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| ||||| || ||||| | ||||| |||||||| | | || |||||
Sbjct 8699 GCAGAGGCTTATCTTTGCTGGGAAACAGCTCGAGGACGGTCGAACACTTGCTGACTATAA 8640
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||||| || || || | ||||||||| | ||| | || ||||||||
Sbjct 8639 CATTCAAAAGGAGTCGACCCTTCATTTGGTTCTCCGTCTTCGTGGTGGTAT 8589
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | |||||||| || ||||| ||||| ||| | || | || |
Sbjct 8590 ATGCAGATTTTTGTCAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAGAGTTCT 8531
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| |||| | || ||||| || || || || ||||||||||| |||||
Sbjct 8530 GACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATACCACCAGATCAG 8471
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| || |||||||| || || ||| | |||||| | | || | | || || |||
Sbjct 8470 CAAAGACTCATTTTTGCTGGCAAGCAACTTGAGGATGGGAGGACGCTTGCTGACTACAAT 8411
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || |||||||| | || |||| | || | || ||||| ||
Sbjct 8410 ATTCAGAAGGAATCAACACTTCACCTGGTGCTTCGCCTCCGTGGTGGGAT 8361
Score = 91.5 bits (100), Expect = 2e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||| || || || | ||| ||||| |
Sbjct 9274 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACACTTGAGGTTGAAAGCTCT 9215
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | || || ||||| || || || || || || || |||||
Sbjct 9214 GATACCATTGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGATCAG 9155
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| |||||||||||||| || ||||| | |||||| | | || ||| || || ||
Sbjct 9154 CAGAGGCTTATTTTTGCTGGTAAACAGCTTGAGGATGGCAGGACCCTAGCTGACTACAAC 9095
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || || || || | |||||||| | || | || ||||| ||
Sbjct 9094 ATTCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTCCGTGGTGGAAT 9045
Score = 89.7 bits (98), Expect = 8e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | ||||| || ||||| || || || ||| | ||| | || ||| |
Sbjct 8362 ATGCAGATATTTGTCAAGACCCTGACAGGAAAGACCATTACTTTGGAGGTGGAGAGCTCA 8303
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| |||||| ||| | || |||||||| || || ||||| || || || |||||
Sbjct 8302 -GACACAATTGATAACGTGAAGGCCAAAATTCAGGACAAGGAAGGGATTCCCCCGGATCA 8244
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | || ||||||||||| || | || ||| | || || || | || || ||
Sbjct 8243 GCAGAGGTTGATCTTTGCAGGAAAGCAGCTTGAAGATGGACGTACCTTGGCTGACTACAA 8184
Query 124718 TATTCAAAAAGAATCAAC 124735
|| || || ||||| ||
Sbjct 8183 CATCCAGAAGGAATCTAC 8166
>seq1057
Length=141302
Score = 105 bits (116), Expect = 1e-17
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || ||||| || || || | ||| ||||| |
Sbjct 137179 ATGCAGATCTTTGTTAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 137120
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| |||| | ||| || ||||| || || || || || || |||||||||
Sbjct 137119 GACACCATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGGATTCCTCCTGATCAA 137060
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| |||||||| ||||| || || || |||||||| | || ||| | | ||| || ||
Sbjct 137059 CAGAGGCTTATCTTTGCTGGTAAGCAGCTAGAGGATGGCCGCACACTTGCAGACTACAAC 137000
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
|| || ||||| || ||| |||| | ||| | |||
Sbjct 136999 ATCCAGAAAGAGTCCACTCTGCACCTAGTTCTTCGT 136964
Score = 93.3 bits (102), Expect = 6e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|| ||||| || || ||||| || || || ||||| || ||||| || ||||| || |||
Sbjct 136639 AAGATTCAGGACAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTAATCTTTGCTGGGAAA 136580
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| | |||||||||||||| | | | || ||||| || || || |||||| | ||
Sbjct 136579 CAGCTCGAGGATAGTCGAACCCTTGCCCACTACAATATCCAGAAGGAGTCAACTCTCCAC 136520
Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768
|||||| | ||| | || ||||| ||
Sbjct 136519 TTGGTTCTCCGTCTTCGTGGTGGCAT 136494
>seq1034
Length=134858
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || ||||||||||| | ||| |||||
Sbjct 72091 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAAACTATAACACTGGAGGTTGAAAGTTCA 72150
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | ||| || ||||| || || |||||||| || ||||||||
Sbjct 72151 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAG 72210
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| ||| | || ||||| || || ||| | |||||| | | || | | || || ||
Sbjct 72211 CAGAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCAGGACGCTTGCTGACTACAAC 72270
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||| || ||||| || | || |||||| | ||| | ||||||| ||
Sbjct 72271 ATTCAGAAGGAATCCACCCTTCACTTGGTTCTTCGTCTTAGAGGTGGCAT 72320
Score = 93.3 bits (102), Expect = 6e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597
|||||||| || | || ||||| || ||||| || || || | ||| ||||| || |
Sbjct 71863 ATGCAAATCTTCGTGAAAACACTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCA 71922
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| |||| | ||| || ||||| || || || || || || ||||||||
Sbjct 71923 -GACACTATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 71981
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || ||||||||||| || || || | |||||| | || || | | || |||||
Sbjct 71982 GCAGAGACTTATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTATAA 72041
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||| || || || || || |||| ||||
Sbjct 72042 TATCCAGAAGGAGTCCACCCTGCACCTGGT 72071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755193771779200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |