Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq318 172 7e-38
seq715 165 1e-35
seq2451 129 7e-25
seq1535 95.1 2e-14
>seq318
Length=266665
Score = 172 bits (190), Expect = 7e-38
Identities = 246/345 (71%), Gaps = 6/345 (2%)
Strand=Plus/Plus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
||| || ||||| |||||||| ||||||||||||| || |||||||| || || ||
Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
||||| |||||||| || ||||| || ||||| ||||| | ||| ||||| ||
Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAA 55995
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33754
||| || || || || ||| || || || || | ||| | | | |||| | | |
Sbjct 55996 GAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGCC 56055
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|||||||| |||||||||| |||||||| || || || |||| | | || |||||
Sbjct 56056 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGC 56112
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
|| ||||| | ||| || |||| || || | ||| || |||| | || || ||
Sbjct 56113 ATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTA 56172
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33919
||| || || |||||||| |||||||| ||||| || || |||||
Sbjct 56173 CATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAA 56217
>seq715
Length=381403
Score = 165 bits (182), Expect = 1e-35
Identities = 410/618 (66%), Gaps = 7/618 (1%)
Strand=Plus/Plus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
||| || |||||||||||||| || || || |||| || || ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
| || ||||| | || |||||||| | ||||||||| | ||| ||| || ||
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAA 115362
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACC-GGCGCTGTC 33754
||| || || || || ||| || || | || | ||| | | || || | |||
Sbjct 115363 GAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTC 115422
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
||||| || | ||||| || |||||||| | || || |||| |||||| |||||
Sbjct 115423 G---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGC 115479
Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874
| ||||| | ||| || ||||| ||| || || || || |||| || ||||||||
Sbjct 115480 GTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATA 115539
Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934
||| || || |||||||| || ||||| ||||| || ||||| || | |||||| |
Sbjct 115540 CATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599
Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994
| ||| | || | || | | | || | |||||| || || ||||| |||
Sbjct 115600 CACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGC 115659
Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054
|| || || || | || || | || || | ||||| | || || |||||
Sbjct 115660 GGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCCA 115719
Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114
| | || || | || | || || || || ||||||| || || |||||||||||
Sbjct 115720 GTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTT 115779
Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174
|| ||||| | |||||| || | |||||||| ||||| || || | || ||| ||
Sbjct 115780 CTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGTT 115839
Query 34175 TGGTGCAAGGATAGGTTC 34192
| || |||| |||||
Sbjct 115840 GGAGGCGAGGAGCGGTTC 115857
>seq2451
Length=68748
Score = 129 bits (142), Expect = 7e-25
Identities = 187/263 (71%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637
||| || ||||| |||||||| ||||||||||||| || ||||| || || || ||
Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108
Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697
|||||| |||||||| || ||||| || ||||| ||||| | ||| ||||| ||
Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAA 68048
Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33754
||| || || | || | | || || || || | ||| | | | |||| | |||
Sbjct 68047 GAAAATCCCCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGTC 67988
Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814
|||||||| |||||||||| |||||||| || || || |||| ||| || |||||
Sbjct 67987 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931
Query 33815 ATTAAAGAGATAGtttttttCAT 33837
|| |||| | ||| || ||||
Sbjct 67930 ATGGGAGAGTTTGTTCTTCTCAT 67908
>seq1535
Length=214281
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
||||| |||||||| | || |||||||| || || |||||| | | || | | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
|| |||| || | || || ||||| | |||||||| || || || | ||| |||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842
||||||||||| |||||||||| ||| | | ||| | | |||||| |||| |
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889
||||| || ||||| || | || |||||| || || || || ||
Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319
Score = 86.0 bits (94), Expect = 8e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475
|||| |||||| || || | || | ||| || | |||| | || ||||||||||| |
Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828
Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535
||| || || ||| | ||||| || || ||||| | ||| | || ||||| |||
Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768
Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595
|||||| | || ||||| || || ||| ||| | || || ||| || || ||
Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708
Query 63596 ATAGATGCCTTCTATGCTATCATCGATCAT 63625
||| || || || ||||||||||| ||||
Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629598982438320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |