Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq318 163 4e-35 seq715 131 2e-25 seq2451 123 3e-23 seq1535 109 7e-19 >seq318 Length=266665 Score = 163 bits (180), Expect = 4e-35 Identities = 246/346 (71%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || ||||| |||||||||||||||||||||| || |||||||| || || || Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||||| |||||||| || ||||| || ||||| ||||| | |||| || || || | Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329 ||||||| || || || || || || || || | ||| | | | |||||| | Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | |||||||| |||||||||| |||||||| || || || |||| | || || | Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 ||| ||||| | ||| || |||| || || | ||| || || | | || || | Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 |||| || || |||||||| |||||||| || || || || ||||| Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAA 56217 >seq715 Length=381403 Score = 131 bits (144), Expect = 2e-25 Identities = 383/583 (66%), Gaps = 9/583 (2%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || |||||||||||||| || || || |||| || || ||||| || || || Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272 | || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| | Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCA-CTGT 36329 ||||||| || || || || || || | || | ||| | | || | | | || Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| || | ||||| || |||||||| | || || |||| || || || | Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | | ||||| | ||| || ||||| ||| || || || || || | || ||||||| Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||| || || |||||||| || ||||| || || || ||||| || | |||||| | Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| | || | || | | | || | |||||| || || || || || Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629 | || || || || | || || | || || | |||| | || || |||| Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | | || || | || | || || || || ||||||| || || |||||||||| Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || ||||| | |||||| || | ||||| || || || || Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq2451 Length=68748 Score = 123 bits (136), Expect = 3e-23 Identities = 191/268 (71%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || ||||| |||||||||||||||||||||| || ||||| || || || || Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 |||||| |||||||| || ||||| || ||||| ||||| | || | || || || | Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049 Query 36273 AGAAAATTCCTTCTACTGCCGCA----AAGGCAATAAGTCTCTCTCCATAAC---CGGCA 36325 ||||||| || | || |||| || || || || | ||| | | | ||||| Sbjct 68048 AGAAAATCCCCT----TGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCA 67993 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| |||||||| |||||||||| |||||||| || || || |||| || || Sbjct 67992 CCGTC---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCG 67936 Query 36386 ATAGCATTAAAGAGATAGtttttttCAT 36413 || |||| |||| | ||| || |||| Sbjct 67935 ATGGCATGGGAGAGTTTGTTCTTCTCAT 67908 >seq1535 Length=214281 Score = 109 bits (120), Expect = 7e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268 |||| |||||| || || | || | ||| || | |||| | || ||||||||||| | Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828 Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328 ||| ||||| ||||| ||||| || || ||||| || ||| | || ||||| ||| Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 |||||| | || ||||| || || ||| ||| | || || ||| || ||||| Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708 Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT 66418 ||| || ||||| || ||||||||| |||| Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | || |||||||| || || |||||| | | || | | | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||| || | || || ||||| | |||||||| || || || | ||| ||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 ||||||||||| |||||||| | || | | ||| | | |||||| |||| | Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682 ||||| || ||||| || | || |||||| || || || || || Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657944339993960