Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq318 163 4e-35
seq715 131 2e-25
seq2451 123 3e-23
seq1535 109 7e-19
>seq318
Length=266665
Score = 163 bits (180), Expect = 4e-35
Identities = 246/346 (71%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213
||| || ||||| |||||||||||||||||||||| || |||||||| || || ||
Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935
Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272
||||| |||||||| || ||||| || ||||| ||||| | |||| || || || |
Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994
Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGT 36329
||||||| || || || || || || || || | ||| | | | |||||| |
Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054
Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389
| |||||||| |||||||||| |||||||| || || || |||| | || || |
Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111
Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449
||| ||||| | ||| || |||| || || | ||| || || | | || || |
Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171
Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
|||| || || |||||||| |||||||| || || || || |||||
Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAA 56217
>seq715
Length=381403
Score = 131 bits (144), Expect = 2e-25
Identities = 383/583 (66%), Gaps = 9/583 (2%)
Strand=Plus/Plus
Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213
||| || |||||||||||||| || || || |||| || || ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 36272
| || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| |
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361
Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCA-CTGT 36329
||||||| || || || || || || | || | ||| | | || | | | ||
Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421
Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389
| ||||| || | ||||| || |||||||| | || || |||| || || || |
Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478
Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449
| | ||||| | ||| || ||||| ||| || || || || || | || |||||||
Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538
Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509
|||| || || |||||||| || ||||| || || || ||||| || | |||||| |
Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598
Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569
| ||| | || | || | | | || | |||||| || || || || ||
Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658
Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCC 36629
| || || || || | || || | || || | |||| | || || ||||
Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718
Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689
| | | || || | || | || || || || ||||||| || || ||||||||||
Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778
Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732
| || ||||| | |||||| || | ||||| || || || ||
Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821
>seq2451
Length=68748
Score = 123 bits (136), Expect = 3e-23
Identities = 191/268 (71%), Gaps = 16/268 (6%)
Strand=Plus/Minus
Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213
||| || ||||| |||||||||||||||||||||| || ||||| || || || ||
Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108
Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272
|||||| |||||||| || ||||| || ||||| ||||| | || | || || || |
Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049
Query 36273 AGAAAATTCCTTCTACTGCCGCA----AAGGCAATAAGTCTCTCTCCATAAC---CGGCA 36325
||||||| || | || |||| || || || || | ||| | | | |||||
Sbjct 68048 AGAAAATCCCCT----TGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCA 67993
Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385
| ||| |||||||| |||||||||| |||||||| || || || |||| || ||
Sbjct 67992 CCGTC---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCG 67936
Query 36386 ATAGCATTAAAGAGATAGtttttttCAT 36413
|| |||| |||| | ||| || ||||
Sbjct 67935 ATGGCATGGGAGAGTTTGTTCTTCTCAT 67908
>seq1535
Length=214281
Score = 109 bits (120), Expect = 7e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 66209 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 66268
|||| |||||| || || | || | ||| || | |||| | || ||||||||||| |
Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828
Query 66269 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACT 66328
||| ||||| ||||| ||||| || || ||||| || ||| | || ||||| |||
Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768
Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388
|||||| | || ||||| || || ||| ||| | || || ||| || |||||
Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708
Query 66389 ATAGATGCCCTCTATACTATCATCCATCAT 66418
||| || ||||| || ||||||||| ||||
Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678
Score = 86.0 bits (94), Expect = 8e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515
||||| |||||||| | || |||||||| || || |||||| | | || | | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575
|| |||| || | || || ||||| | |||||||| || || || | ||| |||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635
||||||||||| |||||||| | || | | ||| | | |||||| |||| |
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAt 66682
||||| || ||||| || | || |||||| || || || || ||
Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657944339993960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |