Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1068 114 1e-20 seq177 114 1e-20 seq5240 104 2e-17 seq670 104 2e-17 seq1057 102 8e-17 seq4991 95.1 1e-14 >seq1068 Length=260286 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || ||||| |||||| Sbjct 186264 GCCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 186323 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||||||||||||| || || |||| || || |||||||||||||| Sbjct 186324 CAAAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGG 186383 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || || ||||||| | ||| || Sbjct 186384 AATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCTACGGTGTCGGAGCTCTCGAC 186443 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 186444 CTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 186491 >seq177 Length=344453 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | ||| ||||| || |||||||| |||||| Sbjct 68473 GCCGCCGCGGAGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGC 68414 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| ||||||||||| || || |||||||||| |||||||| ||||| Sbjct 68413 CAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 68354 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| | ||| || Sbjct 68353 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 68294 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 68293 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 68246 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || |||||||| || ||| Sbjct 68701 GCCGCCGCGGAGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGGC 68642 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| ||||||||||| || || |||||||||| |||||||| ||||| Sbjct 68641 CAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 68582 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||||| | ||| || Sbjct 68581 AATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAAC 68522 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| || || | || || ||||| || ||||| Sbjct 68521 CTCGAGCGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 68474 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||||||||| || || ||| Sbjct 69372 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCTGCCAGGGTCCTCCCA 69313 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || ||||||||||| ||||| ||||||| | ||||| || || || || || || ||| Sbjct 69312 TCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTG 69253 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | | ||||||||| | ||| | Sbjct 69252 TCTTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTTATG 69193 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || || ||||| Sbjct 69192 GTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 69158 >seq5240 Length=30785 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||| || |||||||||||||| Sbjct 4588 CCACCACGGAGACGCAGGACAAGGTGAAGAGTCGACTCCTTCTGAATGTTATAATCAGCA 4529 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| ||||| || || ||||| ||||||| | ||||| || ||||| Sbjct 4528 AGGGTCCTTCCGTCCTCGAGTTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 4469 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | || | ||||| | || ||| ||| Sbjct 4468 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 4409 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||| | ||| || || || || ||||| Sbjct 4408 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTCACAAAGATCTGCAT 4362 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| || || |||||||| ||| Sbjct 4361 GCCACCGCGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 4302 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||| | ||| || || ||| |||||||||| ||||| || || || Sbjct 4301 GAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 4242 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| || ||||| Sbjct 4241 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCCAC 4182 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || || || || ||||| Sbjct 4181 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 4134 >seq670 Length=332965 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || ||||| |||||| || || | ||||||||||||||| || Sbjct 147837 GTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCG 147778 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || |||||||||||||| |||||||| ||||| ||| || || Sbjct 147777 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 147718 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 147717 ACATTATCTATGGTGTCAGAGCTTTCGACCTCTAGCGTGATTGTCTTGCCGGTTAGGGTT 147658 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 147657 TTGACGAAGATCTGCAT 147641 >seq1057 Length=141302 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || |||||||| || || || || || || || |||||||| ||| Sbjct 136071 GTTGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTCCTGCCATCCTCAAGCTGTTTTCCA 136130 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| ||||||| | |||||| || ||||| || ||||||||||| ||| |||| || || Sbjct 136131 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTC-CTGAATTTTGGTCTT 136189 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | || || | | ||||||||| | || | |||||||| ||||| || Sbjct 136190 TACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCAGTCAAGGT 136249 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 136250 CTTCACAAATATCTGCAT 136267 >seq4991 Length=48504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || ||||| |||||||||||||| || | Sbjct 8592 CCACCACGAAGACGGAGAACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTC-AGC 8650 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | ||| |||| ||| ||||||||||| |||||| |||| || | |||||||| || | Sbjct 8651 A-AGTGTTCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTG 8709 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| |||||| || | | || | ||||| | | ||| | Sbjct 8710 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAA 8769 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | || ||||| || | || || || || || |||||| Sbjct 8770 CCTCCAGAGTGATAGTTTTGCCCGTGAGTGTCTTGACAAAAATCTGCATA 8819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || |||| || ||||| ||||||||||| || || | Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCA 8879 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| ||||| || |||||| |||| || | |||||||| || || Sbjct 8880 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 8939 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| |||| | ||| | | || | || || | | ||||| Sbjct 8940 ATGCCTTCCTTATC-CTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCAC 8998 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || || || | ||||| || || |||||||| Sbjct 8999 CTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495891809984800