Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1068 114 1e-20
seq177 114 1e-20
seq5240 104 2e-17
seq670 104 2e-17
seq1057 102 8e-17
seq4991 95.1 1e-14
>seq1068
Length=260286
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | || | || | ||| | || ||||| || || ||||| ||||||
Sbjct 186264 GCCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 186323
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||||||||||||||| || || |||| || || ||||||||||||||
Sbjct 186324 CAAAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGG 186383
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || || ||||||| | ||| ||
Sbjct 186384 AATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCTACGGTGTCGGAGCTCTCGAC 186443
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||||||||| | ||||| ||||| || |||||
Sbjct 186444 CTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 186491
>seq177
Length=344453
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||| | || | ||| | ||| ||||| || |||||||| ||||||
Sbjct 68473 GCCGCCGCGGAGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGC 68414
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| ||||||||||| || || |||||||||| |||||||| |||||
Sbjct 68413 CAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 68354
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | || |||| | ||| ||
Sbjct 68353 AATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCGGAGCTCTCGAC 68294
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | ||||||||||| | ||||| ||||| || |||||
Sbjct 68293 CTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 68246
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | || | || | ||| | ||| ||||| || |||||||| || |||
Sbjct 68701 GCCGCCGCGGAGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGGC 68642
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| ||||||||||| || || |||||||||| |||||||| |||||
Sbjct 68641 CAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 68582
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | ||||||| | ||| ||
Sbjct 68581 AATCCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAAC 68522
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||| || || | || || ||||| || |||||
Sbjct 68521 CTCGAGCGTAATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 68474
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || ||||| || || ||||||||||| || || |||
Sbjct 69372 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAATCTGCCAGGGTCCTCCCA 69313
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| ||||||||||| ||||| ||||||| | ||||| || || || || || || |||
Sbjct 69312 TCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTG 69253
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| | | ||||||||| | ||| |
Sbjct 69252 TCTTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACCTCCAGGGTTATG 69193
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || ||||| || || || || || |||||
Sbjct 69192 GTCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 69158
>seq5240
Length=30785
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||||| || | ||||| || ||||| || ||||||||||||||
Sbjct 4588 CCACCACGGAGACGCAGGACAAGGTGAAGAGTCGACTCCTTCTGAATGTTATAATCAGCA 4529
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||| ||||| || || ||||| ||||||| | ||||| || |||||
Sbjct 4528 AGGGTCCTTCCGTCCTCGAGTTGCTTCCCAGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 4469
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||| || || ||| || || | | || | ||||| | || ||| |||
Sbjct 4468 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGAGGACTCGACC 4409
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||||||| | ||| || || || || |||||
Sbjct 4408 TCGAGGGTGATCGTCTTGCCGGTGAGCGTCTTCACAAAGATCTGCAT 4362
Score = 82.4 bits (90), Expect = 8e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | || | ||| | || ||||| || || |||||||| |||
Sbjct 4361 GCCACCGCGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 4302
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||||| | ||| || || ||| |||||||||| ||||| || || ||
Sbjct 4301 GAGGGTTCGGCCATCTTCCAACTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 4242
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | ||||||| || |||||
Sbjct 4241 AATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGATTCCAC 4182
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||||||||| | || || || || || |||||
Sbjct 4181 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 4134
>seq670
Length=332965
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|||||||| || || ||||| |||||| || || | ||||||||||||||| ||
Sbjct 147837 GTAGACTCCTTCTGGATGTTGTAATCGGCCAAGGTACGGCCGTCTTCGAGCTGTTTTCCG 147778
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || || |||||||||||||| |||||||| ||||| ||| || ||
Sbjct 147777 GCGAAGATGAGGCGCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGACTTG 147718
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| | | || ||||| | || | ||||||||||| | |||
Sbjct 147717 ACATTATCTATGGTGTCAGAGCTTTCGACCTCTAGCGTGATTGTCTTGCCGGTTAGGGTT 147658
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 147657 TTGACGAAGATCTGCAT 147641
>seq1057
Length=141302
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || || || |||||||| || || || || || || || |||||||| |||
Sbjct 136071 GTTGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTCCTGCCATCCTCAAGCTGTTTTCCA 136130
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686
||| ||||||| | |||||| || ||||| || ||||||||||| ||| |||| || ||
Sbjct 136131 GCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTC-CTGAATTTTGGTCTT 136189
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
|| | || | || || | | ||||||||| | || | |||||||| ||||| ||
Sbjct 136190 TACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCAGTCAAGGT 136249
Query 139747 TTTTACGAATATTTGCAT 139764
|| || ||||| |||||
Sbjct 136250 CTTCACAAATATCTGCAT 136267
>seq4991
Length=48504
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || |||| || ||||| |||||||||||||| || |
Sbjct 8592 CCACCACGAAGACGGAGAACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTC-AGC 8650
Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| ||| |||| ||| ||||||||||| |||||| |||| || | |||||||| || |
Sbjct 8651 A-AGTGTTCGACCGTCCTCGAGCTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGTG 8709
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| ||||| || ||||| |||||| || | | || | ||||| | | ||| |
Sbjct 8710 GGATGCCCTCCTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAA 8769
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | || | || ||||| || | || || || || || ||||||
Sbjct 8770 CCTCCAGAGTGATAGTTTTGCCCGTGAGTGTCTTGACAAAAATCTGCATA 8819
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | ||| || |||| || ||||| ||||||||||| || || |
Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCA 8879
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| | ||||| ||||| || |||||| |||| || | |||||||| || ||
Sbjct 8880 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 8939
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|||||||| || || ||| |||| | ||| | | || | || || | | |||||
Sbjct 8940 ATGCCTTCCTTATC-CTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCAC 8998
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | || || || || | ||||| || || ||||||||
Sbjct 8999 CTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495891809984800
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