Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq318 172 8e-38
seq715 165 1e-35
seq2451 114 2e-20
seq1535 109 8e-19
>seq318
Length=266665
Score = 172 bits (190), Expect = 8e-38
Identities = 410/614 (67%), Gaps = 12/614 (2%)
Strand=Plus/Plus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
||| || ||||| |||||||| ||||||||||||| || | |||||| || || ||
Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074
||||| |||||||| || ||||| || ||||| ||||| | |||| || ||| || |
Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994
Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGT 50131
|||| || || || || || || || | || | ||| | | || ||| | |
Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054
Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191
| |||||||| |||||||||| |||||||| || || || |||| | | || ||||
Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111
Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251
||| ||||| | ||| || |||| || || | ||| || |||| | || || |
Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171
Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311
|||| || || |||||||| |||||||| ||||| || || ||||| || || || |
Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCG 56231
Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371
| ||| || || | || || |||| | || || || |||||||| ||
Sbjct 56232 CGACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGG 56291
Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCG--TTGGGTGTTAGTTTATT 50429
| || || || || | || || | |||||||| ||| | |||| || |
Sbjct 56292 CGGCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTG--AGGGAGTC 56349
Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489
||| | || || | || | || || || || | ||||| || || ||||| ||
Sbjct 56350 CCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGC 56409
Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549
||| || ||||| | |||||| | | || ||||| ||||| ||| || | | |||
Sbjct 56410 CTTCTTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATACAGAAGCGGTCTGG 56469
Query 50550 ATTTGGTGCAAGGA 50563
|| || |||||||
Sbjct 56470 GTTGGGGGCAAGGA 56483
>seq715
Length=381403
Score = 165 bits (182), Expect = 1e-35
Identities = 412/619 (67%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
||| || |||||||||||||| || || || |||| || | ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAA 50074
| || ||||| | || |||||||| | ||||||||| | |||| | | ||||| |
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361
Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--ACT-GGCGCTGT 50131
|||| || || || || || || || | || | ||| | | ||| || | ||
Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421
Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191
| ||||| || | ||||| || |||||||| | || || |||| |||||| ||||
Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478
Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251
| | ||||| | ||| || ||||| ||| || || || || |||| || |||||||
Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538
Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311
|||| || || |||||||| || ||||| ||||| || ||||| || | |||||| |
Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598
Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371
| ||| | || | || | | | || | |||||| || || || || ||
Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658
Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431
| || || || || | || || | || || || |||| | || || ||||
Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718
Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491
| | | || || | || | || || || || ||||||| || || ||||||||||
Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778
Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 50551
| || ||||| | |||||| || | |||||||| ||||| || || | || ||| |
Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGT 115838
Query 50552 TTGGTGCAAGGATCGGTTC 50570
| | || |||| ||||||
Sbjct 115839 TGGAGGCGAGGAGCGGTTC 115857
>seq2451
Length=68748
Score = 114 bits (126), Expect = 2e-20
Identities = 186/264 (70%), Gaps = 8/264 (3%)
Strand=Plus/Minus
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
||| || ||||| |||||||| ||||||||||||| || | ||| || || || ||
Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074
|||||| |||||||| || ||||| || ||||| ||||| | || | || ||| || |
Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049
Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT---GGCGCTGT 50131
|||| || || | || | || || | || | ||| | | || ||| | ||
Sbjct 68048 AGAAAATCCCCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGT 67989
Query 50132 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191
| |||||||| |||||||||| |||||||| || || || |||| ||| || ||||
Sbjct 67988 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGG 67932
Query 50192 CATTAAAGAGATAGtttttttCAT 50215
||| |||| | ||| || ||||
Sbjct 67931 CATGGGAGAGTTTGTTCTTCTCAT 67908
>seq1535
Length=214281
Score = 109 bits (120), Expect = 8e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144
|| |||| |||||| || || | || | ||| || | |||| | || |||||||||||
Sbjct 153890 TCTTTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGG 153831
Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204
| ||| ||||| ||||| ||||| || || ||||| || ||| | || ||||| ||
Sbjct 153830 GACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTT 153771
Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264
| |||||| | || ||||| || || ||| ||| | || || ||| || ||
Sbjct 153770 ATGAATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGT 153711
Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCAT 80297
|||||| || ||||| ||||||||||| ||||
Sbjct 153710 ATCATATATCCCCTCAATGCTATCATCCTTCAT 153678
Score = 86.0 bits (94), Expect = 9e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| |||||||| | || |||||||| || || |||||| | | |||| | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| |||| || | || || ||||| | |||||||| || || || | ||| |||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||||||||| |||||||| | || | | ||| | | ||| || |||| |
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561
||||| || ||||| || | || |||||| || || || || ||
Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718019479921160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |