Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq715 104 2e-17 seq1699 87.8 2e-12 >seq715 Length=381403 Score = 104 bits (114), Expect = 2e-17 Identities = 234/346 (68%), Gaps = 8/346 (2%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || |||||||| ||||||| || | ||||| || || || Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 || || |||||||| || || ||||| ||||||||||| || ||| ||| || ||| Sbjct 115305 AACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || ||||| || ||| ||||| | || || || | ||||| ||| | | Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGA--CTTGGATCCGT 115421 Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896 |||||||| ||||| |||| || || | | | || |||||||| || Sbjct 115422 -CGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480 Query 13897 TTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 | ||| | | | |||||| || | | |||| | ||| || || | || | |||| Sbjct 115481 TGGAAGAGTTTGTTCTTCTCATTGGAATCCTTG--ACGTAGGTTTCGAGCAGGAGACTAT 115538 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 |||| |||||||| ||||| || || || ||||| || || || || Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAA 115584 >seq1699 Length=96573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/132 (75%), Gaps = 7/132 (5%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||||| |||||||||||||||||| || || || ||||| ||||| || Sbjct 23309 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAA 23250 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCC-----GG 13771 |||||||| | ||| || || || | ||| || || ||| ||| ||| || | Sbjct 23249 ACCTGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCAAGAAGA 23190 Query 13772 AAAAGAATATTC 13783 ||| |||||||| Sbjct 23189 AAATGAATATTC 23178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478422675845160