Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq715 104 2e-17
seq1699 87.8 2e-12
>seq715
Length=381403
Score = 104 bits (114), Expect = 2e-17
Identities = 234/346 (68%), Gaps = 8/346 (2%)
Strand=Plus/Plus
Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716
|| ||||| ||||| || |||||||| ||||||| || | ||||| || || ||
Sbjct 115245 AAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTC 115304
Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776
|| || |||||||| || || ||||| ||||||||||| || ||| ||| || |||
Sbjct 115305 AACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAG 115363
Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836
|| || ||||| || ||| ||||| | || || || | ||||| ||| | |
Sbjct 115364 AAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGA--CTTGGATCCGT 115421
Query 13837 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCA 13896
|||||||| ||||| |||| || || | | | || |||||||| ||
Sbjct 115422 -CGATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCG 115480
Query 13897 TTGAATAAATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954
| ||| | | | |||||| || | | |||| | ||| || || | || | ||||
Sbjct 115481 TGGAAGAGTTTGTTCTTCTCATTGGAATCCTTG--ACGTAGGTTTCGAGCAGGAGACTAT 115538
Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000
|||| |||||||| ||||| || || || ||||| || || || ||
Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAA 115584
>seq1699
Length=96573
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/132 (75%), Gaps = 7/132 (5%)
Strand=Plus/Minus
Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718
||| ||||||||||| |||||||||||||||||| || || || ||||| ||||| ||
Sbjct 23309 ACAAGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAA 23250
Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA--TGATCC-----GG 13771
|||||||| | ||| || || || | ||| || || ||| ||| ||| || |
Sbjct 23249 ACCTGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCAAGAAGA 23190
Query 13772 AAAAGAATATTC 13783
||| ||||||||
Sbjct 23189 AAATGAATATTC 23178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478422675845160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |