Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq177 100 2e-16
seq379 93.3 3e-14
seq1034 86.0 5e-12
>seq177
Length=344453
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
||||| || | ||||||||||| ||| || | | | || ||||| || ||||| ||||||
Sbjct 69120 TCCTTCTGGATATTGTAATCGGCCAAGGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAA 69061
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
|||| ||||| || || | || | || || || || |||| | || || ||
Sbjct 69060 ATCAGGCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTG 69001
Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097
| | |||||| ||| |||||| || | ||| || ||||||||||| || ||||||||
Sbjct 69000 TCGATCGTGTCG-GAGCTCTCGACCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCAC 68942
Query 43098 AAAAATTTGCAT 43109
||| || |||||
Sbjct 68941 AAAGATCTGCAT 68930
>seq379
Length=244149
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
|||| ||| | ||| |||||| || | ||| ||||| | ||| || | | ||||||||
Sbjct 80255 ACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAGGTCCTTCCGTCGTCC 80196
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
||||| || || |||||||||| ||||| || || | || | ||| || || || |
Sbjct 80195 AATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 80136
Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079
|| | | || || || | | ||||| ||| |||||| || | || || || ||
Sbjct 80135 ATTTTCGCCTTAACATTGTCTATCGTGTC-AGAGCTCTCGACCTCAAGGGTAATCGTCTT 80077
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| ||||| |||||||| ||||| |||||
Sbjct 80076 ACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
>seq1034
Length=134858
Score = 86.0 bits (94), Expect = 5e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014
|| || | ||| ||||| ||||| ||||| | ||| ||||| | || | |||||| ||
Sbjct 72245 TCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTG 72186
Query 43015 TCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073
|| |||| || |||| || || ||| |||||| | || || || | |||||
Sbjct 72185 TC-CTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAACCTCCAGTGTTAT 72127
Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||||||||| || || |||||||||||||| |||||
Sbjct 72126 AGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381240531298602
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |