Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq177 100 2e-16 seq379 93.3 3e-14 seq1034 86.0 5e-12 >seq177 Length=344453 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||||| ||| || | | | || ||||| || ||||| |||||| Sbjct 69120 TCCTTCTGGATATTGTAATCGGCCAAGGTCCTTCCATCCTCCAACTGCTTGCCAGCAAAA 69061 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||| || || | || | || || || || |||| | || || || Sbjct 69060 ATCAGGCGCTGCTGGTCAGGAGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTG 69001 Query 43039 CCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | |||||| ||| |||||| || | ||| || ||||||||||| || |||||||| Sbjct 69000 TCGATCGTGTCG-GAGCTCTCGACCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCAC 68942 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 68941 AAAGATCTGCAT 68930 >seq379 Length=244149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||| | ||| |||||| || | ||| ||||| | ||| || | | |||||||| Sbjct 80255 ACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAGGTCCTTCCGTCGTCC 80196 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 ||||| || || |||||||||| ||||| || || | || | ||| || || || | Sbjct 80195 AATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGG 80136 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTT 43079 || | | || || || | | ||||| ||| |||||| || | || || || || Sbjct 80135 ATTTTCGCCTTAACATTGTCTATCGTGTC-AGAGCTCTCGACCTCAAGGGTAATCGTCTT 80077 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| |||||||| ||||| ||||| Sbjct 80076 ACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 >seq1034 Length=134858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | ||| ||||| ||||| ||||| | ||| ||||| | || | |||||| || Sbjct 72245 TCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTG 72186 Query 43015 TCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| || |||| || || ||| |||||| | || || || | ||||| Sbjct 72185 TC-CTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAACCTCCAGTGTTAT 72127 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||| || || |||||||||||||| ||||| Sbjct 72126 AGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381240531298602