Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq715 159 5e-34
seq1535 100 4e-16
>seq715
Length=381403
Score = 159 bits (176), Expect = 5e-34
Identities = 411/619 (66%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120
||| || |||||||||||||| || || ||||||| || || ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAA 42179
| || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| |
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361
Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCA-CTGT 42236
|||| || || || || || || || | || | ||| | | || | | | ||
Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421
Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296
| ||||| || | ||||| || |||||||| | || || |||| |||||| ||||
Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478
Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356
| | ||||| | ||| || ||||| ||| || || || || |||| || |||||||
Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538
Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416
|||| || || |||||||| || ||||| ||||| || ||||| || | ||||| |
Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598
Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476
||||| | || | || | | | || | ||||||| || || || || ||
Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658
Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCC 42536
| || || || || | || || | || || | ||||| | || | ||||
Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718
Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596
| | | || || | || | || || || || | ||||| || || || |||||||
Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778
Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656
| || ||||| | |||||| || | ||||| || ||||| || || | || ||| |
Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGT 115838
Query 42657 TTGGTGCAAGGATCGGTTC 42675
| | || |||| ||||||
Sbjct 115839 TGGAGGCGAGGAGCGGTTC 115857
>seq1535
Length=214281
Score = 100 bits (110), Expect = 4e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 72171 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 72230
|||| |||||| || || | || | ||| || | |||| | || ||||||||||| |
Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828
Query 72231 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCT 72290
||| ||||| |||| ||||| || || ||||| || ||| | || ||||| ||
Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768
Query 72291 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 72350
|||||| | || ||||| || || ||| ||| | || || ||| || |||||
Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708
Query 72351 ATAGATGCCCTCTATACTATCATCCATCAT 72380
||| || ||||| || ||||||||| ||||
Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670906239194440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |