Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq318 167 3e-36
seq2451 89.7 8e-13
>seq318
Length=266665
Score = 167 bits (184), Expect = 3e-36
Identities = 586/891 (66%), Gaps = 47/891 (5%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
|||| || ||| ||| | | || ||||| |||||||| |||||| |||||||||| |
Sbjct 56453 TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCT 56394
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115
|||| | || |||||||| || ||| ||||||| | | ||||| | | | || |
Sbjct 56393 GGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGACTCCC---TCACCG 56337
Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175
| ||||| | ||||| | ||| | | || ||||| |||| |||||| |||||||
Sbjct 56336 ATGGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCG 56277
Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232
|| ||| || || | || | || ||| | ||| | ||| || | || | ||
Sbjct 56276 TCCTCGAGAACCTTGCTG-CTCGCTTCATGAAGGAGGT--CCAGGTCGCGGAAGCC-CGA 56221
Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291
|| || || || ||||| ||| ||||||||| | ||||| || |||||| ||
Sbjct 56220 GCCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTC 56161
Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350
| || | || || || |||| | | | ||| ||||| | || |||||||
Sbjct 56160 CTCGAGACCTATATCAAGGACTCCGATGAGAAGA-ACAAACTCTTCCATGCCATCGACAT 56102
Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409
|||||| | | || ||||| | |||| | |||||||| | | | ||
Sbjct 56101 GGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGTGCCGAGAG 56042
Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469
||||| |||| | ||| | || ||||| ||| ||||| || ||||| || || |
Sbjct 56041 CTTCG----CCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGA 55986
Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528
|||| |||| | || || ||||| ||||||||||| || ||||| |||||||| |
Sbjct 55985 GTTTCTGCG-CGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCG 55927
Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588
||||| || || || ||||||||||| |||||||| ||||| || || || | |
Sbjct 55926 AACGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGC--TT----GCTTGCTC 55873
Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGC-GA-TGAAAAGGTCATCAA---CATTGTAA 125643
|| | |||| || ||| ||| || ||| || | | || || || |
Sbjct 55872 TACGAACTGC--------TGAAGACGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTA 55821
Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703
||||| ||| || || |||||| | ||| | || ||| | | || | |
Sbjct 55820 GGGATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGG 55761
Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763
|||||||| || | || ||| || ||||||| ||||| ||||||||||| | ||| |
Sbjct 55760 GCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTG---G 55704
Query 125764 AGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGC 125819
| | | ||| || ||||| ||| | || || ||||| | || || | |
Sbjct 55703 GGGCGCTCGGCTGCGGGAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTG- 55645
Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
|| || || |||| |||||||| || |||||||| | |||| ||||||||
Sbjct 55644 ATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTAC 55594
>seq2451
Length=68748
Score = 89.7 bits (98), Expect = 8e-13
Identities = 161/234 (69%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399
|| |||||||||||||| | | || ||||| | |||| | |||||||||
Sbjct 67931 GCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGAC 67990
Query 125400 GACGACAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTT 125458
| | | || ||||| |||| | ||| | || |||| ||| |||| || ||
Sbjct 67991 GGTGCCGAGAGCTTCG----CCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATTTT 68046
Query 125459 CTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACT 125518
||| || || ||||| || || || ||||| ||||||||||| || ||||| |||||
Sbjct 68047 CTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACT 68106
Query 125519 GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572
|| | || || || || || ||||||||||| |||||||| ||||| ||
Sbjct 68107 CACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGC 68160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740801969088440
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