Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq318 167 3e-36 seq2451 89.7 8e-13 >seq318 Length=266665 Score = 167 bits (184), Expect = 3e-36 Identities = 586/891 (66%), Gaps = 47/891 (5%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| ||| | | || ||||| |||||||| |||||| |||||||||| | Sbjct 56453 TGTTCCCGATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCT 56394 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | || |||||||| || ||| ||||||| | | ||||| | | | || | Sbjct 56393 GGACTGCTGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGACTCCC---TCACCG 56337 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | ||||| | ||||| | ||| | | || ||||| |||| |||||| ||||||| Sbjct 56336 ATGGCGAGCGCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCG 56277 Query 125176 TCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGT 125232 || ||| || || | || | || ||| | ||| | ||| || | || | || Sbjct 56276 TCCTCGAGAACCTTGCTG-CTCGCTTCATGAAGGAGGT--CCAGGTCGCGGAAGCC-CGA 56221 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || || || ||||| ||| ||||||||| | ||||| || |||||| || Sbjct 56220 GCCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTC 56161 Query 125292 ATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | || | || || || |||| | | | ||| ||||| | || ||||||| Sbjct 56160 CTCGAGACCTATATCAAGGACTCCGATGAGAAGA-ACAAACTCTTCCATGCCATCGACAT 56102 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409 |||||| | | || ||||| | |||| | |||||||| | | | || Sbjct 56101 GGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGTGCCGAGAG 56042 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTA 125469 ||||| |||| | ||| | || ||||| ||| ||||| || ||||| || || | Sbjct 56041 CTTCG----CCGAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGA 55986 Query 125470 GTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||| |||| | || || ||||| ||||||||||| || ||||| |||||||| | Sbjct 55985 GTTTCTGCG-CGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCG 55927 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 ||||| || || || ||||||||||| |||||||| ||||| || || || | | Sbjct 55926 AACGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGC--TT----GCTTGCTC 55873 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGC-GA-TGAAAAGGTCATCAA---CATTGTAA 125643 || | |||| || ||| ||| || ||| || | | || || || | Sbjct 55872 TACGAACTGC--------TGAAGACGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTA 55821 Query 125644 CCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTG 125703 ||||| ||| || || |||||| | ||| | || ||| | | || | | Sbjct 55820 GGGATGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCCTTGGTGG 55761 Query 125704 GCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 |||||||| || | || ||| || ||||||| ||||| ||||||||||| | ||| | Sbjct 55760 GCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGATCGCTTGCTG---G 55704 Query 125764 AGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAGC 125819 | | | ||| || ||||| ||| | || || ||||| | || || | | Sbjct 55703 GGGCGCTCGGCTGCGGGAAGATATACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTG- 55645 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| |||||||| || |||||||| | |||| |||||||| Sbjct 55644 ATCTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGGCGAGTAC 55594 >seq2451 Length=68748 Score = 89.7 bits (98), Expect = 8e-13 Identities = 161/234 (69%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 125340 GCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGAT 125399 || |||||||||||||| | | || ||||| | |||| | ||||||||| Sbjct 67931 GCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGAC 67990 Query 125400 GACGACAAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTT 125458 | | | || ||||| |||| | ||| | || |||| ||| |||| || || Sbjct 67991 GGTGCCGAGAGCTTCG----CCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATTTT 68046 Query 125459 CTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACT 125518 ||| || || ||||| || || || ||||| ||||||||||| || ||||| ||||| Sbjct 68047 CTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACT 68106 Query 125519 GACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || | || || || || || ||||||||||| |||||||| ||||| || Sbjct 68107 CACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGC 68160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740801969088440