Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq6423 96.9 3e-15 seq1034 93.3 3e-14 seq379 93.3 3e-14 seq4991 86.0 5e-12 seq1057 84.2 2e-11 seq5240 82.4 6e-11 >seq6423 Length=19511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || ||||||||||| ||| || | | |||| || | || Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| || || |||||| || || ||||| ||||| ||| ||| Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||||||| | ||| || || | ||||||||| || || || Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || ||||| Sbjct 10027 AGGGTTTTCACGAAGATCTGCAT 10049 >seq1034 Length=134858 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | ||| || ||||||||||| || || || |||||||| || Sbjct 72319 TGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 72260 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | || || | ||| |||||||| ||||||| | || || || | Sbjct 72259 CAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAG 72200 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| ||| ||| || ||| | || || || || | |||| | Sbjct 72199 GGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAA 72140 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 72139 CCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 >seq379 Length=244149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| |||| | | ||| | |||||||||||| || || || || || ||||| || Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | || |||| || ||||| || ||||| | |||| ||| || ||||| || Sbjct 80213 AAG-GTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGG 80155 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| || || ||||| ||||| ||| ||| | ||||| || || | || || Sbjct 80154 AATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGAC 80095 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||| || ||||| || || ||||| || ||||| ||||| Sbjct 80094 CTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 >seq4991 Length=48504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || || ||||| |||||||| || | || | | | ||||| Sbjct 8837 AACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGTACGACCATCTTC 8896 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || ||||| | || | | || || || ||| || ||||| || || Sbjct 8897 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCCTG 8956 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| || ||| | || |||||||| |||| || || || || || ||||| Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAAAGTGATTGTTTT 9016 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| |||||||| Sbjct 9017 CCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 >seq1057 Length=141302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| || || || || || || |||||||| || || || | || | || || | | Sbjct 136064 ATGGAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCCAAGG-TCCTGCCATCCTCAAGCT 136122 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 |||| ||||| | |||| | ||| ||||| ||||| ||||||||||| ||||| Sbjct 136123 GTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTCCTGAATTT 136182 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || |||||||| | || |||||||| | || || || || || || || || || | Sbjct 136183 TGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCAG 136242 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || ||||| || ||||| Sbjct 136243 TCAAGGTCTTCACAAATATCTGCAT 136267 >seq5240 Length=30785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || ||||| || ||| || ||| | ||||| || || Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | |||| ||| || ||||| ||||||||||| ||||| || ||| Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || ||||| ||| ||| || || ||||| ||||| || || || Sbjct 4216 GCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGTG 4157 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 4156 AGGGTCTTGACAAAGATCTGCAT 4134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362056625995629