Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq6423 96.9 3e-15
seq1034 93.3 3e-14
seq379 93.3 3e-14
seq4991 86.0 5e-12
seq1057 84.2 2e-11
seq5240 82.4 6e-11
>seq6423
Length=19511
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || ||||||||||| ||| || | | |||| || | ||
Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || ||| | |||| || || |||||| || || ||||| ||||| ||| |||
Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||||||| | ||| || || | ||||||||| || || ||
Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || || |||||
Sbjct 10027 AGGGTTTTCACGAAGATCTGCAT 10049
>seq1034
Length=134858
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||| | | | ||| || ||||||||||| || || || |||||||| ||
Sbjct 72319 TGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 72260
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | || | || || | ||| |||||||| ||||||| | || || || |
Sbjct 72259 CAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAG 72200
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| || ||||| ||||| ||| ||| || ||| | || || || || | |||| |
Sbjct 72199 GGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAA 72140
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | || || ||||| || || || ||||| |||||||| |||||
Sbjct 72139 CCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
>seq379
Length=244149
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195
||||| |||| | | ||| | |||||||||||| || || || || || ||||| ||
Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | || |||| || ||||| || ||||| | |||| ||| || ||||| ||
Sbjct 80213 AAG-GTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGG 80155
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||| || || ||||| ||||| ||| ||| | ||||| || || | || ||
Sbjct 80154 AATACCCTCCTTGTCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGAC 80095
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | |||||| || ||||| || || ||||| || ||||| |||||
Sbjct 80094 CTCAAGGGTAATCGTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
>seq4991
Length=48504
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||||||||| || || ||||| |||||||| || | || | | | |||||
Sbjct 8837 AACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCAAGTGTACGACCATCTTC 8896
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || || ||||| | || | | || || || ||| || ||||| || ||
Sbjct 8897 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCCTG 8956
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||||||| || ||| | || |||||||| |||| || || || || || |||||
Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAAAGTGATTGTTTT 9016
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| ||||||||
Sbjct 9017 CCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
>seq1057
Length=141302
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218
||| || || || || || || |||||||| || || || | || | || || | |
Sbjct 136064 ATGGAGAGTTGATTCCTTCTGAATGTTGTAGTCAGCCAAGG-TCCTGCCATCCTCAAGCT 136122
Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278
|||| ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||
Sbjct 136123 GTTTTCCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATCCCTTCTTTGTCCTGAATTT 136182
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
|| |||||||| | || |||||||| | || || || || || || || || || |
Sbjct 136183 TGGTCTTTACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTTATAGTCTTGCCAG 136242
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
||| || || ||||| || |||||
Sbjct 136243 TCAAGGTCTTCACAAATATCTGCAT 136267
>seq5240
Length=30785
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| || || || ||||| || ||| || ||| | ||||| || ||
Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| || || | |||| ||| || ||||| ||||||||||| ||||| || |||
Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| || | || ||||| ||| ||| || || ||||| ||||| || || ||
Sbjct 4216 GCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGTG 4157
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| || |||||
Sbjct 4156 AGGGTCTTGACAAAGATCTGCAT 4134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362056625995629
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |