Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq536 91.5 1e-13
seq1034 87.8 1e-12
seq4991 86.0 5e-12
>seq536
Length=459343
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872
||||||| || | ||| | ||||| ||| | || |||||||| || || |||||||| |
Sbjct 381902 TTCCTCCGCGGAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAG 381843
Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932
| | || | |||||||||||||||| || || | || || | |||||| || |
Sbjct 381842 CGAGGGTCCGGCCGTCCTCCAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTG 381783
Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC- 18990
| | || || ||||| || ||| ||| || | | | | |||| ||| ||||
Sbjct 381782 GGATCCCTTCCTTGTCCTGGATCTTCGCTTTGACATTGTCAATCGTAT---CAGAGCTCT 381726
Query 18991 CG-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| |||| ||| ||||| || || || ||||||||||| || || |||||
Sbjct 381725 CGACCTCGAGGGTTATGGTCTTCCCAGTCAAAGTTTTGACGAAGATCTGCAT 381674
>seq1034
Length=134858
Score = 87.8 bits (96), Expect = 1e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||||| || |||||||| || ||||| || ||||| | || | | ||||||
Sbjct 72071 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTGCGGCCATCCTCC 72012
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||||| ||||| ||| ||||||||||||||||||| || | ||||| |||||
Sbjct 72011 AGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTC 71956
>seq4991
Length=48504
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| || | || |||||||| ||||| ||||| || || | || || | |||||
Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTCCTGCCATCCTC 9124
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||||||||||| ||| ||||||| ||||||||||| || | |||||| |||||
Sbjct 9125 AAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTC 9181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414432494183986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |