Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq536 91.5 1e-13 seq1034 87.8 1e-12 seq4991 86.0 5e-12 >seq536 Length=459343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| || | ||| | ||||| ||| | || |||||||| || || |||||||| | Sbjct 381902 TTCCTCCGCGGAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAG 381843 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | |||||||||||||||| || || | || || | |||||| || | Sbjct 381842 CGAGGGTCCGGCCGTCCTCCAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTG 381783 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC- 18990 | | || || ||||| || ||| ||| || | | | | |||| ||| |||| Sbjct 381782 GGATCCCTTCCTTGTCCTGGATCTTCGCTTTGACATTGTCAATCGTAT---CAGAGCTCT 381726 Query 18991 CG-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||| ||||| || || || ||||||||||| || || ||||| Sbjct 381725 CGACCTCGAGGGTTATGGTCTTCCCAGTCAAAGTTTTGACGAAGATCTGCAT 381674 >seq1034 Length=134858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || |||||||| || ||||| || ||||| | || | | |||||| Sbjct 72071 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTATAGTCCGCAAGGGTGCGGCCATCCTCC 72012 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||| ||||| ||| ||||||||||||||||||| || | ||||| ||||| Sbjct 72011 AGCTGCTTACCAGCAAAAATAAGTCTCTGCTGATCAGGAGGAATTCCCTCCTTGTC 71956 >seq4991 Length=48504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || |||||||| ||||| ||||| || || | || || | ||||| Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTCCTGCCATCCTC 9124 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||||||||| ||| ||||||| ||||||||||| || | |||||| ||||| Sbjct 9125 AAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTC 9181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414432494183986