Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq177 114 1e-20 seq379 105 6e-18 seq6423 100 2e-16 seq536 100 2e-16 seq1808 98.7 8e-16 seq4991 93.3 4e-14 seq829 91.5 1e-13 seq1034 82.4 6e-11 >seq177 Length=344453 Score = 114 bits (126), Expect = 1e-20 Identities = 157/216 (73%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| ||||| || ||||||| ||||| || ||| || | Sbjct 68437 CTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAA 68378 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||||| || | | ||||||||| || || ||||| | Sbjct 68377 GATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 68318 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || |||||||||| ||| ||||| || ||||| || |||||||| |||||| Sbjct 68317 GTCG--ATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTC 68260 Query 48713 ACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGAG 48748 || || ||||||||| | |||| ||||| |||| Sbjct 68259 ACGAAGATCTGCATC---TTTTGA--GAAGAGAGAG 68229 >seq379 Length=244149 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| ||||| || | ||||| |||||| Sbjct 79793 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTCCGGCCATCCTCGAGCTGC 79734 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 79733 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTG 79674 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || |||||||||| ||| ||||| |||||||| || |||| Sbjct 79673 GACTTAACGTTGTCG--ATGGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCGG 79616 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| |||||||| |||||||||||| Sbjct 79615 TGAGGGTTTTCACGAAAATCTGCATC 79590 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCT 48581 |||||| ||| |||||| || || || ||||||||||| ||| || ||| |||| | Sbjct 80250 ATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAG-GTCCTTCCGTCGTCCAATT 80192 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | |||| | ||||||||| ||| || | || ||||||||| |||| Sbjct 80191 GCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATTT 80132 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | |||| || || | ||| ||| | || || || ||||| | Sbjct 80131 TCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGACCTCAAGGGTAATCGTCTTACCAG 80072 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | || |||||||| |||||||||||| Sbjct 80071 TTAGGGTTTTCACGAAAATCTGCATC 80046 >seq6423 Length=19511 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || || | | |||||||||| ||| || Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||||||||| ||| || |||| || ||||| || ||||| Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026 Query 48704 AGAGTTTTCACAAAAATCTGCATCG 48728 || |||||||| || |||||||||| Sbjct 10027 AGGGTTTTCACGAAGATCTGCATCG 10051 >seq536 Length=459343 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | ||| | ||| | || || ||| |||||| || |||||||||||||| Sbjct 381900 CCTCCGCGGAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCG 381841 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||||||||| || ||| || | || | ||||||||| || || Sbjct 381840 AGGGTCCGGCCGTCCTCCAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGG 381781 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||||| || ||| |||| | | || ||||| | ||| | Sbjct 381780 ATCCCTTCCTTGTCCTGGATCTTCGCTTTGACATTGTCAATCGTATCAGAGCTCTCGACC 381721 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| |||||||| || || || | |||||| || || ||||||||| Sbjct 381720 TCGAGGGTTATGGTCTTCCCAGTCAAAGTTTTGACGAAGATCTGCATC 381673 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || || ||||| || || | || ||||||| |||||| Sbjct 381420 TGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTCCGACCGTCCTCGAGCTGC 381361 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | | |||||||||| || ||| Sbjct 381360 TTCCCGGCGAAGATGAGCCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTC 381301 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || || || |||| | ||| ||| | || ||||| || || | Sbjct 381300 GCCTTGACGTTGTCG--ATCGTGTCGGAACTCTCGACCTCAAGGGTAATGGTCTTGCCAG 381243 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| |||||||| || || |||||| Sbjct 381242 TGAGCGTTTTCACGAAGATTTGCATC 381217 >seq1808 Length=93944 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||||||||| || || | || ||||||| |||||| Sbjct 74463 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTCCGGCCGTCCTCAAGCTGC 74404 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || || |||| | |||||||| ||| ||| | || ||||||||| || ||| Sbjct 74403 TTCCCCGCGAAAATGAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCCTGGATCTTC 74344 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| |||| || || ||| | |||||||| || ||||| Sbjct 74343 GCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTCTTCCCGGTT 74284 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || || ||||||||| Sbjct 74283 AGGGTTTTGACGAAGATCTGCATC 74260 >seq4991 Length=48504 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || |||||||| || |||||||||||||||||| ||| |||| ||| || | || || Sbjct 8838 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCA-CCAAGTGTACGACCATCTTC 8896 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | | |||||||||| || | | |||||| ||| Sbjct 8897 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCCTG 8956 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| |||| | | |||||||| | ||| ||| | || || ||||| Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAAAGTGATTGTTTT 9016 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| ||||||||||| || ||||| Sbjct 9017 CCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCC 48574 ||| ||||| || ||| |||||| ||||||||||| |||| | | ||| || | ||| Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CTAGGGTCCTGC-CATCC 9122 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || ||||| ||||| | |||| | | ||||||||| || | | ||||||||| Sbjct 9123 TCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCC 9182 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | |||||||| | || ||| | ||| ||||| Sbjct 9183 TGAATCTTGGCCTTAACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGTGTGATGGTC 9242 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| ||||| ||||| ||||||||| Sbjct 9243 TTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 9275 >seq829 Length=161442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTC 48573 || || || || || ||| | ||||| || ||||||||||| |||| ||| || |||| Sbjct 59432 AAGACCAAGTGGAGGGTGAT-TCCTTCTGGATGTTGTAATCCGCCAGA-GTCTGCCCGTC 59375 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||||| |||||| || | | |||| | |||||||||| | || | ||||||||||| Sbjct 59374 CTCCAACTGCTTCTCGATGAATATTATATGCTGCTGATCAAGGGGAATCCTTTCCTTGTC 59315 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | ||| || ||||| | || |||||| |||| |||| | ||| ||| Sbjct 59314 CTGAATCTTTGCCTTGACATTGTTGATAGTATCGAAGCTCTCCATCTCAAGTGTAATGTG 59255 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | ||||| || ||||||| || |||||| Sbjct 59254 TTTTTCAGTGAGCGTCATCACAAAGATTTGCATC 59221 >seq1034 Length=134858 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || || ||||| ||| ||||| ||||||||||| ||||| || ||| || | |||| Sbjct 72299 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGC-AAGCGTC-CTGCCATCCT 72242 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | || ||||| || | | || || | ||||||||| || | || |||||||||| Sbjct 72241 CAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTGTCCT 72182 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || || | | | || || || | | || ||| | |||||| |||| Sbjct 72181 GAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAACCTCCAGTGTTATAGTTT 72122 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || |||||||||||||||||||| Sbjct 72121 TTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421108633981769