Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq177 114 1e-20
seq379 105 6e-18
seq6423 100 2e-16
seq536 100 2e-16
seq1808 98.7 8e-16
seq4991 93.3 4e-14
seq829 91.5 1e-13
seq1034 82.4 6e-11
>seq177
Length=344453
Score = 114 bits (126), Expect = 1e-20
Identities = 157/216 (73%), Gaps = 9/216 (4%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| |||||||||||||| ||||| || ||||||| ||||| || ||| || |
Sbjct 68437 CTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTGCCGGCGAA 68378
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652
|| | ||||||||||||| || | | ||||||||| || || ||||| |
Sbjct 68377 GATCAGACGCTGCTGATCCGGAGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 68318
Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712
| || |||||||||| ||| ||||| || ||||| || |||||||| ||||||
Sbjct 68317 GTCG--ATGGTATCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTTTTC 68260
Query 48713 ACAAAAATCTGCATCGTGTCTTGATCGAAGAAAGAG 48748
|| || ||||||||| | |||| ||||| ||||
Sbjct 68259 ACGAAGATCTGCATC---TTTTGA--GAAGAGAGAG 68229
>seq379
Length=244149
Score = 105 bits (116), Expect = 6e-18
Identities = 148/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| || ||||||||||| ||||| || | ||||| ||||||
Sbjct 79793 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTCCGGCCATCCTCGAGCTGC 79734
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | |||||||| ||| || | | ||||||||| || ||
Sbjct 79733 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTG 79674
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||| | | | || |||||||||| ||| ||||| |||||||| || ||||
Sbjct 79673 GACTTAACGTTGTCG--ATGGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTTCCGG 79616
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
|||| |||||||| ||||||||||||
Sbjct 79615 TGAGGGTTTTCACGAAAATCTGCATC 79590
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC-GTCCTCCAGCT 48581
|||||| ||| |||||| || || || ||||||||||| ||| || ||| |||| |
Sbjct 80250 ATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAG-GTCCTTCCGTCGTCCAATT 80192
Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641
|||| || | |||| | ||||||||| ||| || | || ||||||||| ||||
Sbjct 80191 GCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATTT 80132
Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
|| ||| | | |||| || || | ||| ||| | || || || ||||| |
Sbjct 80131 TCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGACCTCAAGGGTAATCGTCTTACCAG 80072
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
| || |||||||| ||||||||||||
Sbjct 80071 TTAGGGTTTTCACGAAAATCTGCATC 80046
>seq6423
Length=19511
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| || |||||||| || || | || ||||||||||||||
Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | |||||||| || || | | |||||||||| ||| ||
Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | |||||||||| ||| || |||| || ||||| || |||||
Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026
Query 48704 AGAGTTTTCACAAAAATCTGCATCG 48728
|| |||||||| || ||||||||||
Sbjct 10027 AGGGTTTTCACGAAGATCTGCATCG 10051
>seq536
Length=459343
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | ||| | ||| | || || ||| |||||| || ||||||||||||||
Sbjct 381900 CCTCCGCGGAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCG 381841
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || ||||||||||||| || ||| || | || | ||||||||| || ||
Sbjct 381840 AGGGTCCGGCCGTCCTCCAGCTGTTTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGG 381781
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | |||||||||| || ||| |||| | | || ||||| | ||| |
Sbjct 381780 ATCCCTTCCTTGTCCTGGATCTTCGCTTTGACATTGTCAATCGTATCAGAGCTCTCGACC 381721
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|||| |||||||| || || || | |||||| || || |||||||||
Sbjct 381720 TCGAGGGTTATGGTCTTCCCAGTCAAAGTTTTGACGAAGATCTGCATC 381673
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
|| || ||| |||||| || || ||||| || || | || ||||||| ||||||
Sbjct 381420 TGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTCCGACCGTCCTCGAGCTGC 381361
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| ||| || | || | |||||||||||| || | | |||||||||| || |||
Sbjct 381360 TTCCCGGCGAAGATGAGCCGCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTC 381301
Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701
||||| | | || || || |||| | ||| ||| | || ||||| || || |
Sbjct 381300 GCCTTGACGTTGTCG--ATCGTGTCGGAACTCTCGACCTCAAGGGTAATGGTCTTGCCAG 381243
Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727
|||| |||||||| || || ||||||
Sbjct 381242 TGAGCGTTTTCACGAAGATTTGCATC 381217
>seq1808
Length=93944
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583
||||| || |||||| ||||||||||| || || | || ||||||| ||||||
Sbjct 74463 TGAAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCGAGCGTCCGGCCGTCCTCAAGCTGC 74404
Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643
|| || || |||| | |||||||| ||| ||| | || ||||||||| || |||
Sbjct 74403 TTCCCCGCGAAAATGAGCCGCTGCTGGTCCGGCGGAATACCCTCCTTGTCCTGGATCTTC 74344
Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703
||| | | | ||||| |||| || || ||| | |||||||| || |||||
Sbjct 74343 GCCTTCACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTCTTCCCGGTT 74284
Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727
|| ||||| || || |||||||||
Sbjct 74283 AGGGTTTTGACGAAGATCTGCATC 74260
>seq4991
Length=48504
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| |||||||| || |||||||||||||||||| ||| |||| ||| || | || ||
Sbjct 8838 ACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCA-CCAAGTGTACGACCATCTTC 8896
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || | | || | | |||||||||| || | | |||||| |||
Sbjct 8897 AAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGGATGCCTTCCTTATCCTG 8956
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|||||| |||| | | |||||||| | ||| ||| | || || |||||
Sbjct 8957 AATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACCTCCAAAGTGATTGTTTT 9016
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| ||||| ||||||||||| || |||||
Sbjct 9017 CCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/213 (69%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCC 48574
||| ||||| || ||| |||||| ||||||||||| |||| | | ||| || | |||
Sbjct 9065 CACCAAATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CTAGGGTCCTGC-CATCC 9122
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| ||||| ||||| | |||| | | ||||||||| || | | |||||||||
Sbjct 9123 TCAAGCTGTTTACCAGCAAAAATAAGCCTCTGCTGATCTGGAGGGATGCCCTCCTTGTCC 9182
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
||| || ||| | | | |||||||| | || ||| | ||| |||||
Sbjct 9183 TGAATCTTGGCCTTAACATTGTCAATGGTATCAGAGCTTTCAACCTCAAGTGTGATGGTC 9242
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || ||||| ||||| ||||| |||||||||
Sbjct 9243 TTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 9275
>seq829
Length=161442
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/214 (71%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTC 48573
|| || || || || ||| | ||||| || ||||||||||| |||| ||| || ||||
Sbjct 59432 AAGACCAAGTGGAGGGTGAT-TCCTTCTGGATGTTGTAATCCGCCAGA-GTCTGCCCGTC 59375
Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633
||||| |||||| || | | |||| | |||||||||| | || | |||||||||||
Sbjct 59374 CTCCAACTGCTTCTCGATGAATATTATATGCTGCTGATCAAGGGGAATCCTTTCCTTGTC 59315
Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693
| ||| || ||||| | || |||||| |||| |||| | ||| |||
Sbjct 59314 CTGAATCTTTGCCTTGACATTGTTGATAGTATCGAAGCTCTCCATCTCAAGTGTAATGTG 59255
Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
||| | ||||| || ||||||| || ||||||
Sbjct 59254 TTTTTCAGTGAGCGTCATCACAAAGATTTGCATC 59221
>seq1034
Length=134858
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575
|| || ||||| ||| ||||| ||||||||||| ||||| || ||| || | ||||
Sbjct 72299 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAGC-AAGCGTC-CTGCCATCCT 72242
Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635
| || ||||| || | | || || | ||||||||| || | || ||||||||||
Sbjct 72241 CAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAGGGATACCTTCCTTGTCCT 72182
Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695
||| || || | | | || || || | | || ||| | |||||| ||||
Sbjct 72181 GAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAACCTCCAGTGTTATAGTTT 72122
Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || || || ||||||||||||||||||||
Sbjct 72121 TTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421108633981769
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