Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq595 118 6e-22
seq196 118 6e-22
seq471 107 1e-18
seq203 107 1e-18
seq147 107 1e-18
seq643 105 3e-18
seq384 105 3e-18
seq9 104 1e-17
seq174 100 1e-16
>seq595
Length=199624
Score = 118 bits (130), Expect = 6e-22
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510
|||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |
Sbjct 143411 CAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 143470
Query 11511 CCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||
Sbjct 143471 CCAACTGAGCTAATGGGCC 143489
>seq196
Length=632613
Score = 118 bits (130), Expect = 6e-22
Identities = 84/96 (88%), Gaps = 1/96 (1%)
Strand=Plus/Plus
Query 11435 AGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493
||||||| | ||||| || ||||||||||| | | |||||||| ||||||||||||||
Sbjct 509136 AGAATTAGTCGAAAAAACAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 509195
Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||| ||||||||||||||| ||||
Sbjct 509196 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 509231
>seq471
Length=305370
Score = 107 bits (118), Expect = 1e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 192159 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 192218
Query 11516 TGAGCTAATGGGCCGT 11531
||||||||| ||||||
Sbjct 192219 TGAGCTAATAGGCCGT 192234
>seq203
Length=405124
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 254503 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 254562
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 254563 CAACTGAGCTAATAGGCC 254580
>seq147
Length=430950
Score = 107 bits (118), Expect = 1e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 327114 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 327055
Query 11512 CAACTGAGCTAATGGGCC 11529
||||||||||||| ||||
Sbjct 327054 CAACTGAGCTAATAGGCC 327037
>seq643
Length=186750
Score = 105 bits (116), Expect = 3e-18
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
|||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 82758 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 82817
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||| ||||
Sbjct 82818 CTGAGCTAATAGGCC 82832
>seq384
Length=488014
Score = 105 bits (116), Expect = 3e-18
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
|| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 302832 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 302773
Query 11513 AACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 302772 AACTGAGCTAATAGGCC 302756
>seq9
Length=748533
Score = 104 bits (114), Expect = 1e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 101923 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 101982
Query 11516 TGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 101983 TGAGCTAATAGGCC 101996
>seq174
Length=353366
Score = 100 bits (110), Expect = 1e-16
Identities = 74/87 (85%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|| ||||| | ||||| ||| | | |||||||| |||||||||||||||||||||||
Sbjct 311905 TATAAAATAGGACTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 311846
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| ||||||||||||||| ||||
Sbjct 311845 CGCTCTAACCAACTGAGCTAATAGGCC 311819
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261402702307444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |