Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq103 152 8e-33 seq4526 150 3e-32 seq1028 134 2e-27 seq2348 116 6e-22 seq574 113 7e-21 seq887 102 1e-17 seq199 86.0 1e-12 seq5972 82.4 1e-11 >seq103 Length=408496 Score = 152 bits (168), Expect = 8e-33 Identities = 181/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || || | | || ||||| || ||||| || || ||||| ||||| || || Sbjct 310841 GCCAAGCGCCACCGTAAGGTC-CTTCGCGACAACATTCAGGGGATCACTAAGCCGGCGAT 310899 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||||||||||||||| || ||||||||| || || | |||| || |||| Sbjct 310900 TCGGCGTCTGGCTCGTCGTGGCGGCGTCAAGCGTATCAGCGGCCTCATCTACGAGGAGAC 310959 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||||||||||| ||| ||| |||| |||||| | ||| ||||| Sbjct 310960 TCGCGGCGTCCTCAAGATCTTCCTAGAGAACGTCATCCGTGATGCAGTGACCTACACCGA 311019 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| |||||| ||||||| ||||||| || |||| | || || Sbjct 311020 GCACGCCCGCCGTAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTGAAGAGGCAGGG 311079 Query 16672 CCG 16674 ||| Sbjct 311080 CCG 311082 Score = 147 bits (162), Expect = 3e-31 Identities = 181/245 (74%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || ||||| ||||| || || || || ||||| || || Sbjct 306238 GCCAAGCGCCACCGCAAGGTC-CTCCGAGACAACATTCAGGGGATTACGAAGCCGGCGAT 306296 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| |||||||| || ||||||||| || ||| | |||| || |||| Sbjct 306297 TCGGCGTCTGGCCCGTCGTGGCGGTGTCAAGCGTATCAGTGGCCTCATCTACGAGGAGAC 306356 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||||||||||| ||| |||||||| ||| || | || ||||| Sbjct 306357 TCGCGGTGTCCTTAAGATCTTCCTTGAGAACGTTATCCGTGACGCGGTGACTTACACCGA 306416 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || ||||| | ||||| |||||||||| |||| | || || Sbjct 306417 GCACGCTCGCCGCAAAACCGTCACAGCTATGGACGTCGTCTATGCTCTGAAGAGGCAGGG 306476 Query 16672 CCGTA 16676 ||||| Sbjct 306477 CCGTA 306481 >seq4526 Length=49190 Score = 150 bits (166), Expect = 3e-32 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 45411 GCCAAGCGCCACCGCAAGGTC-CTTCGTGACAACATTCAGGGTATCACTAAGCCGGCTAT 45469 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| ||||| || || |||||||| || ||| | |||| || |||| Sbjct 45470 ACGGCGTCTGGCCCGTCGCGGCGGCGTCAAGCGCATCAGTGGCCTCATCTACGAGGAGAC 45529 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | || ||||||||| ||| |||||||| ||| || | ||| ||||| Sbjct 45530 CCGCGGTGTCCTCAAAATCTTCCTCGAGAACGTTATCCGTGACGCCGTGACCTACACCGA 45589 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||||||| |||||| ||||||| ||||||| || | || | || || Sbjct 45590 GCACGCCCGCCGTAAGACCGTCACCGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGG 45649 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | || || ||||| |||| Sbjct 45650 CCGCACCCTCTACGGCTTTGGCGGTTA 45676 >seq1028 Length=224087 Score = 134 bits (148), Expect = 2e-27 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || |||||||| || || || || |||||||||||||| | || || ||| Sbjct 213610 GACAACATTCAGGGAATCACGAAACCCGCGATTCGTCGTCTGGCTCGCAGAGGCGGCGTC 213551 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || |||| || |||| | | | ||| | ||||||||||| || Sbjct 213550 AAGCGTATCAGCGGTCTGATCTACGAGGAGACTAGAGGAGTTCTCAAGATCTTCCTGGAG 213491 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | || || |||||||| | | | ||||| ||||| || Sbjct 213490 AATGTGATTCGTGATGCTGTTACGTACACTGAGCACGCCAGAAGGAAGACGGTCACGGCC 213431 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| ||||| | || || | | ||||||| ||||| |||| Sbjct 213430 ATGGATGTTGTCTATGCTTTGAAGAGGCAGGGGAGGACCCTTTATGGGTTTGGGGGTTA 213372 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || ||||| ||||| || || || ||||||||||| | |||||||| Sbjct 102729 GACAACATTCAGGGGATCACGAAGCCCGCGATTCGCCGTCTGGCTCGCAGAGGTGGAGTG 102670 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || |||| || |||| | | ||| | ||||||||||| || Sbjct 102669 AAGCGTATAAGCGGTCTGATCTACGAGGAGACGAGAGGGGTTCTCAAGATCTTCCTGGAG 102610 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | ||||||| | || || |||||||| | | ||||| || || | Sbjct 102609 AATGTTATTCGTGATGCTGTTACGTACACTGAGCACGCCAGGAGGAAGACGGTGACGGCT 102550 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| ||||| | || || | | ||||||| ||||| |||| Sbjct 102549 ATGGATGTTGTCTATGCTTTGAAGAGGCAGGGGAGGACTCTTTATGGGTTTGGGGGTTA 102491 >seq2348 Length=84247 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || ||||| ||||| || || || ||||||||||| | |||||||| Sbjct 44351 GACAACATTCAGGGGATCACGAAGCCCGCGATTCGCCGTCTGGCTCGCAGAGGTGGAGTG 44292 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| | || || |||| || |||| | | ||| | ||||||||||| || Sbjct 44291 AAGCGTATAAGCGGTCTGATCTACGAGGAGACGAGAGGGGTTCTCAAGATCTTCCTGGAG 44232 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| | ||||||| | || || |||||||| | | ||||| || || | Sbjct 44231 AATGTTATTCGTGATGCTGTTACGTACACTGAGCACGCCAGGAGGAAGACGGTGACGGCT 44172 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| ||||| | || || | | ||||||| ||||| |||| Sbjct 44171 ATGGATGTTGTCTATGCTTTGAAGAGGCAGGGGAGGACTCTTTATGGGTTTGGCGGTTA 44113 >seq574 Length=196974 Score = 113 bits (124), Expect = 7e-21 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| |||||| || |||||||| || ||||| ||||| || || Sbjct 114146 GCGAAGCGCCACCGCAAGGTTCTTCGCGACAACATCCAGGGGATCACGAAGCCGGCGATT 114205 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| ||||| || ||||| |||||| || || | | || || |||| Sbjct 114206 CGCCGCCTGGCCCGTCGCGGCGGAGTGAAGCGTATCAGCGGCCTCATTTACGAGGAGACG 114265 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||||||||||| ||| ||| |||| || || | ||| |||||| Sbjct 114266 CGCGGCGTGCTCAAGATCTTCCTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGAG 114325 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | ||||| || || | |||||| |||| || || ||||| | |||||| Sbjct 114326 CACGCCCGTAGGAAGACGGTGACGGCGATGGATGTCGTGTACGCGCTGAAAAGGCAAGGC 114385 Score = 82.4 bits (90), Expect = 1e-11 Identities = 181/269 (67%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 116987 GCGAAGCGCCACCGCAAGGTC-CTCCGTGACAACATCCAGGGGATCACGAAGCCGGCGAT 117045 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || || || ||||| || || |||||| | || | |||| || |||| Sbjct 117046 TCGCCGCCTTGCCCGCCGTGGCGGCGTAAAGCGTATTAGCGGCCTCATCTACGAGGAGAC 117105 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | || || ||||| ||| || || | || || | ||| ||||| Sbjct 117106 TCGCGGCGTGCTCAAAATTTTCCTGGAGAATGTGATTCGCGACGCCGTGACCTACACCGA 117165 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| || || | |||||| | ||||| || |||| | || || Sbjct 117166 GCACGCCCGGAGGAAGACAGTGACGGCGATGGATGTGGTCTACGCGCTGAAGAGGCAGGG 117225 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| || || |||||| Sbjct 117226 CAGGACATTGTATGGATTCGGCGGTTAAT 117254 >seq887 Length=362991 Score = 102 bits (112), Expect = 1e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || ||||||||||| || || ||||||||||| || || Sbjct 158299 GCGAAGCGCCATCGTAAGGTGCTCCGAGATAACATTCAGGGCATCACCAAGCCGGCGATT 158240 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||| | | ||||| || ||| | || || ||| |||| || |||| Sbjct 158239 CGGCGGCTGGCTAGAAGGGGTGGCGTGAAGAGGATCAGCGGTTTGATCTACGAGGAGACC 158180 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || ||||||||||| || ||| || |||| |||||| | ||| || ||| Sbjct 158179 AGAGGGGTCTTGAAGATCTTTCTGGAGAATGTGATCCGTGATGCCGTTACCTACACGGAG 158120 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || || || ||||| ||||| |||||||| | || || || Sbjct 158119 CATGCCCGGCGAAAGACGGTCACAGCCATGGATGTGGTTTACGC 158076 >seq199 Length=675000 Score = 86.0 bits (94), Expect = 1e-12 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||| | || ||||| ||||| ||||| |||| |||||| | | | |||| ||| || Sbjct 96778 CTTTGTGACAACATTCAAGGCATCACTAAGCTAGCTATTCTGCATTTGGCCTGTCAATGT 96837 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||| | || ||| | |||| || |||| || || ||| | || |||||| Sbjct 96838 AACGTTGAGCATATCGGTGGCCTCATCTACGACGAGACTCATGGTGTCCTCAAAATCTTC 96897 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||||||| || || ||||||| | ||| ||| || | || |||| || ||| Sbjct 96898 CTCAAGAACGCCATTTGTGATGCTGTGACCTACACCAAGAATGCCTGTTGTAAAACAGTC 96957 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 | | ||||||| ||| |||| ||| | || | ||||||| | | ||||| ||||| Sbjct 96958 AACACCATGGACATCATCTACGCACTCAATAGGTAAGGCCGCACCCTCTATGGCTTTGGC 97017 Query 16694 AGTTA 16698 |||| Sbjct 97018 TGTTA 97022 >seq5972 Length=22272 Score = 82.4 bits (90), Expect = 1e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 |||| || |||| | | | ||| | ||||||||||| ||| || || | ||||||| Sbjct 21324 TCTACGAGGAGACTAGAGGAGTTCTCAAGATCTTCCTGGAGAATGTGATTCGTGATGCTG 21383 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 | || || |||||||| | | | ||||| ||||| |||||||| | |||||||| | Sbjct 21384 TTACGTACACTGAGCACGCCAGAAGGAAGACGGTCACGGCCATGGATGTTGTCTATGCTT 21443 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || || | | ||||||| ||||| |||| Sbjct 21444 TGAAGAGGCAGGGGAGGACCCTTTATGGGTTTGGGGGTTA 21483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79049810608917