Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_006820.1
Length=196280
Score E
Sequences producing significant alignments: (Bits) Value
seq752 367 2e-96
seq1263 307 1e-78
seq2510 159 4e-34
seq37 141 1e-28
seq1519 95.1 2e-14
>seq752
Length=193215
Score = 367 bits (406), Expect = 2e-96
Identities = 496/684 (73%), Gaps = 18/684 (3%)
Strand=Plus/Minus
Query 137931 CTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACA 137990
|| ||||| ||| ||||| || | || |||||| |||| || ||||| ||||| ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 137991 AGCTGGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACA 138047
||||| || || || ||||| ||||| || | ||||| |||||| | ||
Sbjct 189552 TCATGGTATACTCATGGATTGGC---TAGTTCCTATTTGGAAGGATGCAATTTCTTAACC 189496
Query 138048 GCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCT 138107
|| || |||||||||||||| || | | | ||||| | | |||| || ||||||
Sbjct 189495 GCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCT 189436
Query 138108 GAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCG 138167
|| | ||||||||| | || |||| |||| | || || || ||||| ||||| ||
Sbjct 189435 GAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCT 189376
Query 138168 CTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCT 138226
|||||||| | || | || || || || ||| | || || |||| | |||| |||
Sbjct 189375 CTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT 189316
Query 138227 GGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTC 138284
| | || | || || || || |||||||||||||||| ||| || ||||| || ||
Sbjct 189315 GTT---CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 189259
Query 138285 AGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGT 138344
|| |||||||| ||||| | ||||| || ||||||||||||| ||| ||||||
Sbjct 189258 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 189199
Query 138345 GTGGCAGCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTC 138401
|| || || || || |||||| || || |||| |||||||| |||| ||||| |
Sbjct 189198 GTAGCGGCTATATTTCGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTG 189142
Query 138402 AACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATT 138461
||||| |||||||||||||| || || ||| | | || | |||||||| || |||||
Sbjct 189141 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATC 189082
Query 138462 CATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAA 138521
||||||||||| |||||||||||||| | ||||||||| || ||||||| ||
Sbjct 189081 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 189022
Query 138522 GCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGG 138581
|| ||| | || || |||| |||||||| ||||||||||| || |||||||| | |||
Sbjct 189021 GCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 188962
Query 138582 TCGCAAATCTTTGGAATTGCTTTT 138605
|| ||||||||||| ||||||||
Sbjct 188961 TCCCAAATCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 307 bits (340), Expect = 1e-78
Identities = 424/586 (72%), Gaps = 18/586 (3%)
Strand=Plus/Plus
Query 137942 TGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACAC 138001
||| ||||| || | || |||||| |||| || ||||| ||||| || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 138002 CCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTC 138058
|| || ||||| ||||| || | ||||| |||||| | || || || |||||
Sbjct 54866 TCATGGATTGGC---TAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922
Query 138059 GACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGG 138118
||||||||| || | | | ||||| | | |||| ||||||||||| | |||||
Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982
Query 138119 AGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGC 138178
|||| | || |||| |||| | || || || ||||| ||||| || |||||||| ||
Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042
Query 138179 CTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--T 138235
|| | || || || || ||| | || || ||||| | |||| |||| | || |
Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTT---CAATT 55099
Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295
|| || || || |||||||||||||||| ||| || ||||| || || || |||||
Sbjct 55100 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 55159
Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355
||| ||||| | ||||| || ||||||||||||| ||| |||||||| || || ||
Sbjct 55160 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTAT 55219
Query 138356 CTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCA 138412
|| |||| |||| || |||| ||||||| ||||| ||||| | ||||| |||||
Sbjct 55220 ATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCA 55276
Query 138413 TATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTAC 138472
||||||||| || || ||| | | || | |||||||| || ||||| ||||||||||
Sbjct 55277 TATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTAT 55336
Query 138473 AGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTT 138518
|||||||||||||| | ||||||||| || ||||||| |||
Sbjct 55337 TGTAGAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382
>seq2510
Length=74850
Score = 159 bits (176), Expect = 4e-34
Identities = 139/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743
||||| ||||| |||||||| || ||||| ||| | || || ||||| |||||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803
||||||||||| ||||| ||||||||||| || |||||| | || |||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGT 138856
|||||||| || ||||| ||||| |||||| || | || ||||| || ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828
>seq37
Length=530226
Score = 141 bits (156), Expect = 1e-28
Identities = 199/278 (72%), Gaps = 1/278 (0%)
Strand=Plus/Plus
Query 138477 GAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACT 138536
||||||| ||| | ||||||||| || | ||||| ||| || ||| | || ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 138537 CAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGA 138596
|||| | |||||| ||||||||||| || |||||||| | ||||| |||||||||||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 138597 ATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGT 138656
|| |||| ||||| ||||| | || || |||||| ||||| | || | |||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 138657 CTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTC 138716
| |||| || | | | | | ||||| ||| | |||||||| | |||| |||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 138717 GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATT 138754
|| || |||||||| ||||||| ||||||||||||||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082
>seq1519
Length=169030
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 135735 TGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTG 135794
|||||||| ||| |||||| ||| || || ||||| ||||||| |||||||| || |
Sbjct 82771 TGGGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCG 82712
Query 135795 TTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTT 135854
||||| || |||| || |||| || || ||| |||||||||||| | || || |
Sbjct 82711 TTTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCT 82652
Query 135855 CTGGAACTTTTAACTACATGCTTGTTTTCC 135884
|| | ||||| |||| ||| || | ||||
Sbjct 82651 CTAGTACTTTCAACTTTATGATTATATTCC 82622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627750024457600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |