Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq752 367 2e-96 seq1263 307 1e-78 seq2510 159 4e-34 seq37 141 1e-28 seq1519 95.1 2e-14 >seq752 Length=193215 Score = 367 bits (406), Expect = 2e-96 Identities = 496/684 (73%), Gaps = 18/684 (3%) Strand=Plus/Minus Query 137931 CTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACA 137990 || ||||| ||| ||||| || | || |||||| |||| || ||||| ||||| || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 137991 AGCTGGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACA 138047 ||||| || || || ||||| ||||| || | ||||| |||||| | || Sbjct 189552 TCATGGTATACTCATGGATTGGC---TAGTTCCTATTTGGAAGGATGCAATTTCTTAACC 189496 Query 138048 GCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCT 138107 || || |||||||||||||| || | | | ||||| | | |||| || |||||| Sbjct 189495 GCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCT 189436 Query 138108 GAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCG 138167 || | ||||||||| | || |||| |||| | || || || ||||| ||||| || Sbjct 189435 GAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCT 189376 Query 138168 CTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCT 138226 |||||||| | || | || || || || ||| | || || |||| | |||| ||| Sbjct 189375 CTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCT 189316 Query 138227 GGTAGGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTC 138284 | | || | || || || || |||||||||||||||| ||| || ||||| || || Sbjct 189315 GTT---CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 189259 Query 138285 AGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGT 138344 || |||||||| ||||| | ||||| || ||||||||||||| ||| |||||| Sbjct 189258 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGT 189199 Query 138345 GTGGCAGCAATCTTCCGATTC---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTC 138401 || || || || || |||||| || || |||| |||||||| |||| ||||| | Sbjct 189198 GTAGCGGCTATATTTCGATTCATCCTTTTTTTCCA--AGGGTTTC-ATAATTGGACATTG 189142 Query 138402 AACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATT 138461 ||||| |||||||||||||| || || ||| | | || | |||||||| || ||||| Sbjct 189141 AACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATC 189082 Query 138462 CATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAA 138521 ||||||||||| |||||||||||||| | ||||||||| || ||||||| || Sbjct 189081 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 189022 Query 138522 GCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGG 138581 || ||| | || || |||| |||||||| ||||||||||| || |||||||| | ||| Sbjct 189021 GCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 188962 Query 138582 TCGCAAATCTTTGGAATTGCTTTT 138605 || ||||||||||| |||||||| Sbjct 188961 TCCCAAATCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 307 bits (340), Expect = 1e-78 Identities = 424/586 (72%), Gaps = 18/586 (3%) Strand=Plus/Plus Query 137942 TGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCTGGTACAC 138001 ||| ||||| || | || |||||| |||| || ||||| ||||| || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 138002 CCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAGCTGTTTC 138058 || || ||||| ||||| || | ||||| |||||| | || || || ||||| Sbjct 54866 TCATGGATTGGC---TAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922 Query 138059 GACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGG 138118 ||||||||| || | | | ||||| | | |||| ||||||||||| | ||||| Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 138119 AGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGC 138178 |||| | || |||| |||| | || || || ||||| ||||| || |||||||| || Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 138179 CTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--T 138235 || | || || || || ||| | || || ||||| | |||| |||| | || | Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTT---CAATT 55099 Query 138236 CCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCT 138295 || || || || |||||||||||||||| ||| || ||||| || || || ||||| Sbjct 55100 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 55159 Query 138296 GATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAAT 138355 ||| ||||| | ||||| || ||||||||||||| ||| |||||||| || || || Sbjct 55160 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTAT 55219 Query 138356 CTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCA 138412 || |||| |||| || |||| ||||||| ||||| ||||| | ||||| ||||| Sbjct 55220 ATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCATTTCA 55276 Query 138413 TATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTAC 138472 ||||||||| || || ||| | | || | |||||||| || ||||| |||||||||| Sbjct 55277 TATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTAT 55336 Query 138473 AGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTT 138518 |||||||||||||| | ||||||||| || ||||||| ||| Sbjct 55337 TGTAGAAAATACTTTATTTGAAGATGGTGATGCTGCAAATACATTT 55382 >seq2510 Length=74850 Score = 159 bits (176), Expect = 4e-34 Identities = 139/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||||| ||||| |||||||| || ||||| ||| | || || ||||| |||||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 ||||||||||| ||||| ||||||||||| || |||||| | || |||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGT 138856 |||||||| || ||||| ||||| |||||| || | || ||||| || || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 56828 >seq37 Length=530226 Score = 141 bits (156), Expect = 1e-28 Identities = 199/278 (72%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 138477 GAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACT 138536 ||||||| ||| | ||||||||| || | ||||| ||| || ||| | || || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 138537 CAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGA 138596 |||| | |||||| ||||||||||| || |||||||| | ||||| ||||||||||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 138597 ATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGT 138656 || |||| ||||| ||||| | || || |||||| ||||| | || | ||| Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 138657 CTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTC 138716 | |||| || | | | | | ||||| ||| | |||||||| | |||| ||| Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 138717 GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATT 138754 || || |||||||| ||||||| |||||||||||||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082 >seq1519 Length=169030 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 135735 TGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTG 135794 |||||||| ||| |||||| ||| || || ||||| ||||||| |||||||| || | Sbjct 82771 TGGGTATGTGCCGCTGGATTGCTGTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCG 82712 Query 135795 TTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTT 135854 ||||| || |||| || |||| || || ||| |||||||||||| | || || | Sbjct 82711 TTTTCATGATCTATCCAATTGGTCATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCT 82652 Query 135855 CTGGAACTTTTAACTACATGCTTGTTTTCC 135884 || | ||||| |||| ||| || | |||| Sbjct 82651 CTAGTACTTTCAACTTTATGATTATATTCC 82622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627750024457600