Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq587 95.1 3e-15 seq1519 80.6 8e-11 >seq587 Length=401750 Score = 95.1 bits (104), Expect = 3e-15 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 20109 ATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GT 20167 ||| ||||||||||||||||||| |||||||| || || ||||| || ||||||||| || Sbjct 44403 ATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 44462 Query 20168 CAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGA 20227 ||| || |||| || | |||||| | | ||| | |||||| || | || Sbjct 44463 CAA-GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGA 44521 Query 20228 AGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||| || | ||| |||||||||| || | || ||||| Sbjct 44522 AGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCT 44567 >seq1519 Length=169030 Score = 80.6 bits (88), Expect = 8e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGG 19733 || |||||| |||| | | |||| ||| || || || | | || ||| |||| Sbjct 82748 GTTGCATATTCAGCTTCTGTTGCAGCTGCTACCGCCGTTTTCATGATCTATCCAATTGGT 82689 Query 19734 CAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTC 19793 || ||||||||| ||||||||||||| | || |||||| ||||||| ||||||||| | Sbjct 82688 CATGGGAGTTTTTCTGATGGTATGCCTTTAGGAATCTCTAGTACTTTCAACTTTATGATT 82629 Query 19794 GTATTCC 19800 |||||| Sbjct 82628 ATATTCC 82622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144393969389364