Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq1263 183 3e-41 seq752 178 1e-39 >seq1263 Length=120960 Score = 183 bits (202), Expect = 3e-41 Identities = 375/558 (67%), Gaps = 0/558 (0%) Strand=Plus/Plus Query 171869 TTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGGTA 171928 |||||| || | || | || || ||||| ||| || || || || || |||||||| Sbjct 54803 TTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTA 54862 Query 171929 CACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATC 171988 || ||||| | || || ||| | || ||| || || ||||| || ||||| || Sbjct 54863 TACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922 Query 171989 AACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGG 172048 || |||| || | | | ||| | ||||| |||||||| ||||| || ||||| Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 172049 AGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGT 172108 |||| | || |||| ||||| || || || |||| ||||| || | || || | Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 172109 CTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACG 172168 || ||||| |||||||| ||| | | || ||||| |||| | |||| | || Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102 Query 172169 TCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTAAT 172228 ||||| || ||| | |||||||| || ||||| || || | || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 172229 ATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTT 172288 |||||| |||||||| | |||||||||| || || |||||||| || || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 172289 TCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGAT 172348 ||| | || | || | || || || || ||| || | || |||||||||||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 172349 GGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACA 172408 ||| || || ||| || | || | || | ||||| || || |||||||| | ||| | Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 172409 GAACACATTGTATGAAGA 172426 || || || | |||||| Sbjct 55343 AAATACTTTATTTGAAGA 55360 >seq752 Length=193215 Score = 178 bits (196), Expect = 1e-39 Identities = 379/566 (67%), Gaps = 0/566 (0%) Strand=Plus/Minus Query 171861 CTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACC 171920 || || |||||||| || | || | || || ||||| ||| || || || || || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 171921 TCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCA 171980 |||||||| || ||||| | || || ||| | || ||| || || ||||| || Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCC 189493 Query 171981 GCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAG 172040 ||||| || || |||| || | | | ||| | ||||| ||||| || ||||| Sbjct 189492 GCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAA 189433 Query 172041 GCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTA 172100 || ||||||||| | || |||| ||||| || || || |||| ||||| || | Sbjct 189432 GCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTC 189373 Query 172101 CATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTT 172160 || || || ||||| |||||||| ||| | | || |||| |||| | |||| Sbjct 189372 CACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTT 189313 Query 172161 GGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATC 172220 | || ||||| || ||| | |||||||| || ||||| || || | Sbjct 189312 CAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTA 189253 Query 172221 TTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCA 172280 || || || |||||| |||||||| | |||||||||| || || |||||||| || Sbjct 189252 TTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCG 189193 Query 172281 GCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTT 172340 || || ||||| | || | || | || || || || ||| || | || |||||| Sbjct 189192 GCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTT 189133 Query 172341 CATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCA 172400 ||||||||||| || || ||| || | || | || | ||||| || || |||||||| Sbjct 189132 CATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCT 189073 Query 172401 ACAGTACAGAACACATTGTATGAAGA 172426 || ||| | || || || | |||||| Sbjct 189072 ACTGTAGAAAATACTTTATTTGAAGA 189047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570070852571160