Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq318 165 1e-35
seq715 159 4e-34
seq2451 120 4e-22
seq1535 95.1 2e-14
>seq318
Length=266665
Score = 165 bits (182), Expect = 1e-35
Identities = 408/618 (66%), Gaps = 6/618 (1%)
Strand=Plus/Plus
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
||| || ||||| |||||||| ||||||||||||| || | |||||| || || ||
Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
||||| |||||||| || ||||| || ||||| ||||| | ||| || || ||
Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAA 55995
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33476
||| || || || || ||| || || || || | ||| | | | |||| | | |
Sbjct 55996 GAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGCC 56055
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
|||||||| |||||||||| |||||||| || || || |||| | | || |||||
Sbjct 56056 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGC 56112
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
|| ||||| | ||| || |||| || || | ||| || |||| | || || ||
Sbjct 56113 ATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTA 56172
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
||| || || |||||||| |||||||| ||||| || || ||||| || || || |
Sbjct 56173 CATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGC 56232
Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716
| ||| || || | || || | || | || || || |||||||| |||
Sbjct 56233 GACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGC 56292
Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776
|| || || || | || || | ||||||| ||| | || || | |||
Sbjct 56293 GGCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCA 56352
Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
| || || | || | || || || || | ||||| || || ||||| |||||
Sbjct 56353 GTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTT 56412
Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896
|| ||||| | |||||| | || ||||| ||||| ||| || | | ||| ||
Sbjct 56413 CTTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATACAGAAGCGGTCTGGGTT 56472
Query 33897 TGGTGCAAGGATGGGTTC 33914
|| ||||||| ||| ||
Sbjct 56473 GGGGGCAAGGAGGGGCTC 56490
>seq715
Length=381403
Score = 159 bits (176), Expect = 4e-34
Identities = 411/619 (66%), Gaps = 9/619 (1%)
Strand=Plus/Plus
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
||| || |||||||||||||| || || || |||| || | ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
| || ||||| | || |||||||| | ||||||||| | ||| |||||| ||
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAA 115362
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACC-GGCGCTGTC 33476
||| || || || || ||| || || | || | ||| | | || || | |||
Sbjct 115363 GAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTC 115422
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
||||| || | ||||| || |||||||| | || || |||| |||||| |||||
Sbjct 115423 G---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGC 115479
Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596
| ||||| | ||| || ||||| ||| || || || || |||| || ||||||||
Sbjct 115480 GTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATA 115539
Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656
||| || || |||||||| || ||||| ||||| || ||||| || | |||||| |
Sbjct 115540 CATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599
Query 33657 AATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGG 33715
| ||| | || | || | | |||| || | |||||| || || || || ||
Sbjct 115600 CACCTGGATCTC-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658
Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775
| || || || || | || || | || || | ||||| | || || ||||
Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
| | | || || | || | || || || || ||||||| || || ||||||||||
Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778
Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGAT 33895
| || ||||| | |||||| || |||||||| ||||| || || | || ||| |
Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGT 115838
Query 33896 TTGGTGCAAGGATGGGTTC 33914
| | || |||| |||||
Sbjct 115839 TGGAGGCGAGGAGCGGTTC 115857
>seq2451
Length=68748
Score = 120 bits (132), Expect = 4e-22
Identities = 185/263 (70%), Gaps = 6/263 (2%)
Strand=Plus/Minus
Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359
||| || ||||| |||||||| ||||||||||||| || | ||| || || || ||
Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108
Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419
|||||| |||||||| || ||||| || ||||| ||||| | ||| || || ||
Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAA 68048
Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33476
||| || || | || | | || || || || | ||| | | | |||| | |||
Sbjct 68047 GAAAATCCCCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGTC 67988
Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536
|||||||| |||||||||| |||||||| || || || |||| ||| || |||||
Sbjct 67987 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931
Query 33537 ATTAAAGAGATAGtttttttCAT 33559
|| |||| | ||| || ||||
Sbjct 67930 ATGGGAGAGTTTGTTCTTCTCAT 67908
>seq1535
Length=214281
Score = 95.1 bits (104), Expect = 2e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424
|||| |||||| || || | || | ||| || | |||| | || ||||||||||| |
Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828
Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484
||| || || ||| | ||||| || || ||||| || ||| | || ||||| |||
Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768
Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544
|||||| | || ||||| || || ||| ||| | || || ||| || || ||
Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708
Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT 63574
||| || ||||| ||||||||||| ||||
Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678
Score = 86.0 bits (94), Expect = 8e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671
||||| |||||||| | || |||||||| || || |||||| | | || | | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731
|| |||| || | || || ||||| | |||||||| || || || | ||| |||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791
||||||||||| |||||||| | || | | ||| | | |||||| |||| |
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
||||| || ||||| || | || |||||| || || || || ||
Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622730967240040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |