Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq318 165 1e-35 seq715 159 4e-34 seq2451 120 4e-22 seq1535 95.1 2e-14 >seq318 Length=266665 Score = 165 bits (182), Expect = 1e-35 Identities = 408/618 (66%), Gaps = 6/618 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || ||||| |||||||| ||||||||||||| || | |||||| || || || Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||||| |||||||| || ||||| || ||||| ||||| | ||| || || || Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAA 55995 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33476 ||| || || || || ||| || || || || | ||| | | | |||| | | | Sbjct 55996 GAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGCC 56055 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||||| |||||||||| |||||||| || || || |||| | | || ||||| Sbjct 56056 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGC 56112 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 || ||||| | ||| || |||| || || | ||| || |||| | || || || Sbjct 56113 ATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGTA 56172 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || |||||||| |||||||| ||||| || || ||||| || || || | Sbjct 56173 CATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCTCGGGCTTCCGC 56232 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGC 33716 | ||| || || | || || | || | || || || |||||||| ||| Sbjct 56233 GACCTGGACCTCCTTCATGAAGCGAGCAGCAAGGTTCTCGAGGACGATTCCGTCGGAGGC 56292 Query 33717 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 33776 || || || || | || || | ||||||| ||| | || || | ||| Sbjct 56293 GGCGAAGAAAGCGAGGACGTGGGTGATAAAATGGCGCTCGCCATCGGTGAGGGAGTCCCA 56352 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || || | || | || || || || | ||||| || || ||||| ||||| Sbjct 56353 GTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCAGCAGTCCAGAAGGAGGCCTCAGCCTT 56412 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || ||||| | |||||| | || ||||| ||||| ||| || | | ||| || Sbjct 56413 CTTGTACATCTCCCAGATTTGGGGGTACTGGATCGGGAACATACAGAAGCGGTCTGGGTT 56472 Query 33897 TGGTGCAAGGATGGGTTC 33914 || ||||||| ||| || Sbjct 56473 GGGGGCAAGGAGGGGCTC 56490 >seq715 Length=381403 Score = 159 bits (176), Expect = 4e-34 Identities = 411/619 (66%), Gaps = 9/619 (1%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || |||||||||||||| || || || |||| || | ||||| || || || Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 | || ||||| | || |||||||| | ||||||||| | ||| |||||| || Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAA 115362 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--ACC-GGCGCTGTC 33476 ||| || || || || ||| || || | || | ||| | | || || | ||| Sbjct 115363 GAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGTC 115422 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 ||||| || | ||||| || |||||||| | || || |||| |||||| ||||| Sbjct 115423 G---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGC 115479 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 | ||||| | ||| || ||||| ||| || || || || |||| || |||||||| Sbjct 115480 GTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTATA 115539 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33656 ||| || || |||||||| || ||||| ||||| || ||||| || | |||||| | Sbjct 115540 CATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGC 115599 Query 33657 AATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGG 33715 | ||| | || | || | | |||| || | |||||| || || || || || Sbjct 115600 CACCTGGATCTC-CTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658 Query 33716 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33775 | || || || || | || || | || || | ||||| | || || |||| Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718 Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | | | || || | || | || || || || ||||||| || || |||||||||| Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778 Query 33836 TTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGAT 33895 | || ||||| | |||||| || |||||||| ||||| || || | || ||| | Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACATGCAGAAGCGATCTGGGT 115838 Query 33896 TTGGTGCAAGGATGGGTTC 33914 | | || |||| ||||| Sbjct 115839 TGGAGGCGAGGAGCGGTTC 115857 >seq2451 Length=68748 Score = 120 bits (132), Expect = 4e-22 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || ||||| |||||||| ||||||||||||| || | ||| || || || || Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 |||||| |||||||| || ||||| || ||||| ||||| | ||| || || || Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAA 68048 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGTC 33476 ||| || || | || | | || || || || | ||| | | | |||| | ||| Sbjct 68047 GAAAATCCCCTTGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCACCGTC 67988 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 |||||||| |||||||||| |||||||| || || || |||| ||| || ||||| Sbjct 67987 ---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931 Query 33537 ATTAAAGAGATAGtttttttCAT 33559 || |||| | ||| || |||| Sbjct 67930 ATGGGAGAGTTTGTTCTTCTCAT 67908 >seq1535 Length=214281 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 63365 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63424 |||| |||||| || || | || | ||| || | |||| | || ||||||||||| | Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828 Query 63425 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACT 63484 ||| || || ||| | ||||| || || ||||| || ||| | || ||||| ||| Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||||| | || ||||| || || ||| ||| | || || ||| || || || Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708 Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT 63574 ||| || ||||| ||||||||||| |||| Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | || |||||||| || || |||||| | | || | | | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||| || | || || ||||| | |||||||| || || || | ||| ||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 ||||||||||| |||||||| | || | | ||| | | |||||| |||| | Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || ||||| || | || |||||| || || || || || Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622730967240040