Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1034 105 6e-18
seq35 86.0 6e-12
seq670 82.4 7e-11
seq16 82.4 7e-11
>seq1034
Length=134858
Score = 105 bits (116), Expect = 6e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826
||||| | ||||| || || | |||||||| | |||||| | ||| | ||| | |
Sbjct 72319 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAAGTGGAGAGTTCA 72378
Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886
||||| ||||| | |||||| |||||| ||||| ||||| || ||||| ||||
Sbjct 72379 --GACACTATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCAGATC 72436
Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946
| ||||| ||||| | | ||||||||||| || |||| | | | | ||||| |
Sbjct 72437 AGCAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTACA 72496
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|||| ||||| || |||||| |||| ||||| ||
Sbjct 72497 ACATCCAAAAGGAGTCTACTCTCCACCTGGTTCT 72530
>seq35
Length=543480
Score = 86.0 bits (94), Expect = 6e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| ||||||| || | || ||| |||| | ||||| |
Sbjct 477778 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACAATTACCCTCGAGGTTGAATCGTCC 477837
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||||||||| | || || ||||| ||||| |||||||| |||||||| ||
Sbjct 477838 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 477897
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | || || | || ||| || || || || || | | | | || |||||| |||
Sbjct 477898 CAGCGGCTGATCTTCGCCGGAAAGCAGCTAGAGGACGGGCGGACCCTCGCCGACTACAAC 477957
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || || || || || |||| || |||||
Sbjct 477958 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCT 477989
>seq670
Length=332965
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || | ||||| | || | |||
Sbjct 147638 AAGATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACAATCACGCTAGAGGTCGAAAGC 147697
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||| || | ||||| ||||| ||||| ||||| || |||||||||
Sbjct 147698 TCTGACACCATAGATAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 147757
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | ||||| | || ||| ||||| |||||||| | | | | | ||| ||
Sbjct 147758 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 147817
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || ||||| ||||||| |||||
Sbjct 147818 AACATCCAGAAGGAGTCTACCCTCCATCTCGTCCT 147852
>seq16
Length=633244
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
|||||| || || |||||||| || || ||||||||| | ||||| | || | | ||
Sbjct 229802 AAGATTCAAGATAAGGAAGGGATTCCGCCAGATCAACAACGTCTCATCTTCGTCAGAAAG 229861
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972
|| ||||| | || | ||| | |||||||||||| || || ||||| ||| |||||
Sbjct 229862 CAGCTCGAGGGTGGTCGAACTCTAGCCGACTATAACATCCAGAAGGAATCAACTCTCCAT 229921
Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995
|| || || || || | |||||
Sbjct 229922 CTTGTTCTCAGGCTCCGTGGAGG 229944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478496250297680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |