Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1034 105 6e-18 seq35 86.0 6e-12 seq670 82.4 7e-11 seq16 82.4 7e-11 >seq1034 Length=134858 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 ||||| | ||||| || || | |||||||| | |||||| | ||| | ||| | | Sbjct 72319 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAAGTGGAGAGTTCA 72378 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 ||||| ||||| | |||||| |||||| ||||| ||||| || ||||| |||| Sbjct 72379 --GACACTATCGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCAGATC 72436 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | ||||| ||||| | | ||||||||||| || |||| | | | | ||||| | Sbjct 72437 AGCAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGTCGTACTCTTGCTGACTACA 72496 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| || |||||| |||| ||||| || Sbjct 72497 ACATCCAAAAGGAGTCTACTCTCCACCTGGTTCT 72530 >seq35 Length=543480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||||||| || | || ||| |||| | ||||| | Sbjct 477778 ATGCAGATCTTCGTGAAAACCCTAACTGGGAAGACAATTACCCTCGAGGTTGAATCGTCC 477837 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| |||||||| |||||||| || Sbjct 477838 GACACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 477897 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||| || || || || || | | | | || |||||| ||| Sbjct 477898 CAGCGGCTGATCTTCGCCGGAAAGCAGCTAGAGGACGGGCGGACCCTCGCCGACTACAAC 477957 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || |||| || ||||| Sbjct 477958 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCT 477989 >seq670 Length=332965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || | ||||| | || | ||| Sbjct 147638 AAGATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACAATCACGCTAGAGGTCGAAAGC 147697 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | ||||| ||||| ||||| ||||| || ||||||||| Sbjct 147698 TCTGACACCATAGATAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 147757 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | || ||| ||||| |||||||| | | | | | ||| || Sbjct 147758 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 147817 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||||| ||||||| ||||| Sbjct 147818 AACATCCAGAAGGAGTCTACCCTCCATCTCGTCCT 147852 >seq16 Length=633244 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| || || |||||||| || || ||||||||| | ||||| | || | | || Sbjct 229802 AAGATTCAAGATAAGGAAGGGATTCCGCCAGATCAACAACGTCTCATCTTCGTCAGAAAG 229861 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 || ||||| | || | ||| | |||||||||||| || || ||||| ||| ||||| Sbjct 229862 CAGCTCGAGGGTGGTCGAACTCTAGCCGACTATAACATCCAGAAGGAATCAACTCTCCAT 229921 Query 26973 CTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || | ||||| Sbjct 229922 CTTGTTCTCAGGCTCCGTGGAGG 229944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478496250297680