Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5240 91.5 1e-13 seq1057 87.8 2e-12 seq1034 86.0 5e-12 seq4991 82.4 7e-11 seq670 82.4 7e-11 >seq5240 Length=30785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||| ||| |||| |||||| || Sbjct 4362 ATGCAGATCTTTGTGAAGACGCTCACCGGCAAGACGATCACCCTCGAGGTCGAGTCCTCT 4421 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| ||||| || || |||||||| ||||| || || Sbjct 4422 GACACGATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCGGACCAG 4481 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || ||||||||||| || | || | | | ||||||||| Sbjct 4482 CAGAGGCTGATCTTCGCTGGGAAGCAACTCGAGGACGGAAGGACCCTTGCTGATTATAAC 4541 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || |||| Sbjct 4542 ATTCAGAAGGAGTCGACTCTTCA 4564 >seq1057 Length=141302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || || | || || || | Sbjct 136951 ATGCAGATTTTTGTGAAAACTCTTACTGGGAAAACCATCACTCTGGAGGTTGAAAGCTCT 136892 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| |||||| |||||||||||||| ||||| || || Sbjct 136891 GATACAATTGACAATGTGAAAGCCAAGATTCAGGACAAAGAAGGCATCCCTCCTGACCAG 136832 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||| ||||| | | || |||||||| || |||| ||| | || | || || |||| Sbjct 136831 CAGAGGCTGATATTTGCTGGTAAGCAACTTGAGGATGGCAGGACACTT--GCTGACTATA 136774 Query 24169 ACATTCAAAAAGAATCTAC 24187 ||||||| || |||||||| Sbjct 136773 ACATTCAGAAGGAATCTAC 136755 >seq1034 Length=134858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 ||||| | ||||| ||||| | ||||||||| | || || | || || || | || Sbjct 72091 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAAACTATAACACTGGAGGTTGAAAGTTCA 72150 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| || || | || ||| |||||| ||||| ||||| || ||||| |||| Sbjct 72151 --GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATC 72208 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTAT 24167 | ||||| |||| | | ||||||||||| || |||| ||| ||| || || || Sbjct 72209 AGCAGAGGTTGATATTTGCTGGCAAGCAACTTGAGGATGGCAG-GACGCTTGCTGACTAC 72267 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||| || ||||| || |||| || || Sbjct 72268 AACATTCAGAAGGAATCCACCCTTCACTTGGT 72299 >seq4991 Length=48504 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| |||||| | ||||| ||| | || || | || || || | Sbjct 9047 AATGCAAATCTTTGTGAAAACACTCACTGGGAAAACAATCACTTTGGAGGTGGAAAGCTC 8988 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | |||||| || ||| || || |||||||| || || ||||| Sbjct 8987 TGATACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGCATCCCACCGGATCA 8928 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | | || ||||| || ||||||| | | | | || || || Sbjct 8927 GCAGAGGCTTATCTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGGTGACTACAA 8868 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||| || || || ||||||| || Sbjct 8867 CATTCAAAAGGAGTCAACCCTTCATTTGGT 8838 >seq670 Length=332965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || | || ||||| | Sbjct 147638 AAGATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACAATCACGCTAGAGGTCGAAAGC 147697 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||| || | ||||| ||||| ||||| |||||||| ||||||||| Sbjct 147698 TCTGACACCATAGATAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 147757 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||| || || |||||||| | | | | | | |||||| Sbjct 147758 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGTACCTTGGCCGATTAC 147817 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || ||||| Sbjct 147818 AACATCCAGAAGGAGTCTAC 147837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429790494744195