Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq318 159 4e-34
seq715 140 4e-28
seq2451 120 4e-22
seq1535 109 7e-19
>seq318
Length=266665
Score = 159 bits (176), Expect = 4e-34
Identities = 246/347 (71%), Gaps = 8/347 (2%)
Strand=Plus/Plus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
||| || ||||| |||||||||||||||||||||| || |||||||| || || ||
Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775
||||| |||||||| || ||||| || ||||| ||||| | |||| || || || |
Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 32832
||||||| || || || || || || || || | ||| | | | |||| | |
Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054
Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
| |||||||| |||||||||| |||||||| || || || |||| | || || |
Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
||| ||||| | ||| || |||| || || | ||| || || | | || || |
Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|||| || || |||||||| |||||||| || || || || ||||||
Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAG 56218
>seq715
Length=381403
Score = 140 bits (154), Expect = 4e-28
Identities = 385/583 (66%), Gaps = 9/583 (2%)
Strand=Plus/Plus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
||| || |||||||||||||| || || || |||| || || ||||| || || ||
Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775
| || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| |
Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361
Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACC-GGCGCTGT 32832
||||||| || || || || || || | || | ||| | | || || | ||
Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421
Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
| ||||| || | ||||| || |||||||| | || || |||| || || || |
Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
| | ||||| | ||| || ||||| ||| || || || || || | || |||||||
Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012
|||| || || |||||||| || ||||| || || || ||||| ||| | |||||| |
Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598
Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072
| ||| | || | || | | | || | |||||| || || || || ||
Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658
Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132
| || || || || | || || | || || | ||||| | || || ||||
Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718
Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| | | || || | || | || || || || ||||||| || || ||||||||||
Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778
Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
| || ||||| | |||||| || | ||||| || || || ||
Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821
>seq2451
Length=68748
Score = 120 bits (132), Expect = 4e-22
Identities = 190/268 (71%), Gaps = 16/268 (6%)
Strand=Plus/Minus
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
||| || ||||| |||||||||||||||||||||| || ||||| || || || ||
Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775
|||||| |||||||| || ||||| || ||||| ||||| | || | || || || |
Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049
Query 32776 AGAAAATTCCTTCTACTGCCGCA----AAGGCAATAAGTCTCTCTCCATAAC---CGGCG 32828
||||||| || | || |||| || || || || | ||| | | | ||||
Sbjct 68048 AGAAAATCCCCT----TGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCA 67993
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| ||| |||||||| |||||||||| |||||||| || || || |||| || ||
Sbjct 67992 CCGTC---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCG 67936
Query 32889 ATAGCATTAAAGAGATAGtttttttCAT 32916
|| |||| |||| | ||| || ||||
Sbjct 67935 ATGGCATGGGAGAGTTTGTTCTTCTCAT 67908
>seq1535
Length=214281
Score = 109 bits (120), Expect = 7e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279
|||| |||||| || || | || | ||| || | |||| | || ||||||||||| |
Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828
Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339
||| ||||| ||||| ||||| || || ||||| || ||| | || ||||| |||
Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768
Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399
|||||| | || ||||| || || ||| ||| | || || ||| || |||||
Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708
Query 63400 ATAGATGCCCTCTATACTATCATCCATCAT 63429
||| || ||||| || ||||||||| ||||
Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678
Score = 89.7 bits (98), Expect = 7e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526
||||| |||||||| | || |||||||| ||||| |||||| | | || | | | |
Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586
|| |||| || | || || ||||| | |||||||| || || || | ||| |||
Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426
Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646
||||||||||| |||||||| | || | | ||| | | |||||| |||| |
Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366
Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
||||| || ||||| || | || |||||| || || || || ||
Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633412058412400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |