Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq318 159 4e-34 seq715 140 4e-28 seq2451 120 4e-22 seq1535 109 7e-19 >seq318 Length=266665 Score = 159 bits (176), Expect = 4e-34 Identities = 246/347 (71%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || ||||| |||||||||||||||||||||| || |||||||| || || || Sbjct 55876 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGT 55935 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||||| |||||||| || ||||| || ||||| ||||| | |||| || || || | Sbjct 55936 CAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGCAGAAACTCCCGGAGA 55994 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCGCTGT 32832 ||||||| || || || || || || || || | ||| | | | |||| | | Sbjct 55995 AGAAAATCCCCTCGACGCAAGCGAACGCGATCAGCCGCTCGGCGAAGCTCTCGGCACCGC 56054 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | |||||||| |||||||||| |||||||| || || || |||| | || || | Sbjct 56055 C---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGG 56111 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 ||| ||||| | ||| || |||| || || | ||| || || | | || || | Sbjct 56112 CATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTGATATAGGTCTCGAGGAGGAGGCTGT 56171 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| || || |||||||| |||||||| || || || || |||||| Sbjct 56172 ACATCTCGGAGTGAATGTTCTCAATGGCGATCTGGAAGCCATAGAAG 56218 >seq715 Length=381403 Score = 140 bits (154), Expect = 4e-28 Identities = 385/583 (66%), Gaps = 9/583 (2%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || |||||||||||||| || || || |||| || || ||||| || || || Sbjct 115244 CAAGCACGCGAAATCGCAGTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGT 115303 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAA 32775 | || ||||| | || |||||||| | ||||||||| | |||| | | | ||||| | Sbjct 115304 CAACCCAGGCATCAACCC-CGCTTTTTCAACCAAAATATCG-CGCAGAAGCTTCCAGAGA 115361 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACC-GGCGCTGT 32832 ||||||| || || || || || || | || | ||| | | || || | || Sbjct 115362 AGAAAATCCCCTCCACGCAAGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGATCCGT 115421 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | ||||| || | ||||| || |||||||| | || || |||| || || || | Sbjct 115422 CG---ATCCATTTCAGCGCCCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGG 115478 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | | ||||| | ||| || ||||| ||| || || || || || | || ||||||| Sbjct 115479 CGTGGAAGAGTTTGTTCTTCTCATTGGAATCCTTGACGTAGGTTTCGAGCAGGAGACTAT 115538 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| || || |||||||| || ||||| || || || ||||| ||| | |||||| | Sbjct 115539 ACATCTCAGAGTGAATGTTCTCGATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCG 115598 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | ||| | || | || | | | || | |||||| || || || || || Sbjct 115599 CCACCTGGATCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGG 115658 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | || || || || | || || | || || | ||||| | || || |||| Sbjct 115659 CGGCGAAGAATGCGAGGACGTGGGTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTTCC 115718 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | | | || || | || | || || || || ||||||| || || |||||||||| Sbjct 115719 AGTGAGGGAGGTCCTGGGACAAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCT 115778 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 | || ||||| | |||||| || | ||||| || || || || Sbjct 115779 TCTTGTACATCTCCCAGATTTCCGGGTATTGGATCGGGAACAT 115821 >seq2451 Length=68748 Score = 120 bits (132), Expect = 4e-22 Identities = 190/268 (71%), Gaps = 16/268 (6%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 ||| || ||||| |||||||||||||||||||||| || ||||| || || || || Sbjct 68167 CAAGCAAGCGAAGTCGCAGTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGT 68108 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 |||||| |||||||| || ||||| || ||||| ||||| | || | || || || | Sbjct 68107 GAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAGAATATCG-CGTAGAAACTCCCGGAGA 68049 Query 32776 AGAAAATTCCTTCTACTGCCGCA----AAGGCAATAAGTCTCTCTCCATAAC---CGGCG 32828 ||||||| || | || |||| || || || || | ||| | | | |||| Sbjct 68048 AGAAAATCCCCT----TGACGCAAACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCA 67993 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| |||||||| |||||||||| |||||||| || || || |||| || || Sbjct 67992 CCGTC---GATCCACTTGAGAGCCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCG 67936 Query 32889 ATAGCATTAAAGAGATAGtttttttCAT 32916 || |||| |||| | ||| || |||| Sbjct 67935 ATGGCATGGGAGAGTTTGTTCTTCTCAT 67908 >seq1535 Length=214281 Score = 109 bits (120), Expect = 7e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 63220 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63279 |||| |||||| || || | || | ||| || | |||| | || ||||||||||| | Sbjct 153887 TTTGCCTCCTCCTTGGTCAACATAACGAGCAGTATCATTAAACACCCTCAACATTGGGAC 153828 Query 63280 AATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACT 63339 ||| ||||| ||||| ||||| || || ||||| || ||| | || ||||| ||| Sbjct 153827 AATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCTCGAATGTTATG 153768 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 |||||| | || ||||| || || ||| ||| | || || ||| || ||||| Sbjct 153767 AATTGAGACCCCAATTCCTCCAGCTGATTTGCTGATGACCGCACACTCTTTCAAGGTATC 153708 Query 63400 ATAGATGCCCTCTATACTATCATCCATCAT 63429 ||| || ||||| || ||||||||| |||| Sbjct 153707 ATATATCCCCTCAATGCTATCATCCTTCAT 153678 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| |||||||| | || |||||||| ||||| |||||| | | || | | | | Sbjct 153545 GTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGGGACATCATGTGG 153486 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||| || | || || ||||| | |||||||| || || || | ||| ||| Sbjct 153485 TATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGCAACCCTCATCAAC 153426 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| |||||||| | || | | ||| | | |||||| |||| | Sbjct 153425 ATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTAGGACCTTTCAAGG 153366 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| || | || |||||| || || || || || Sbjct 153365 GTTTTGAACCCAAAGTAATCATAATCAAAGTCACGATCATAGATGAT 153319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633412058412400