Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq752 329 4e-85 seq1263 275 7e-69 seq587 109 6e-19 seq37 95.1 1e-14 >seq752 Length=193215 Score = 329 bits (364), Expect = 4e-85 Identities = 488/687 (71%), Gaps = 11/687 (2%) Strand=Plus/Minus Query 167360 TTACTT---CTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 |||||| || ||||| ||| ||| | || | || |||||| |||| || || || Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAA 167472 ||||| || |||||||| || || ||||| ||||| | ||| ||| ||| || Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AA 189506 Query 167473 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 167532 ||| | || || ||||| || |||||||| | | | | ||||| | | |||| Sbjct 189505 TTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACT 189446 Query 167533 TTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGC 167592 || |||||||| | || || ||||| | | |||||||| | || || || ||| | Sbjct 189445 ATGAGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGAC 189386 Query 167593 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGAT 167652 ||||| || |||||||| | || | || ||||| |||||| | || ||| |||| | Sbjct 189385 GTTTGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACT 189326 Query 167653 AAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGT 167712 | | || | || ||||| ||||| || || || |||| ||| |||||||| Sbjct 189325 TGCTCGGTCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGT 189266 Query 167713 CTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTC 167772 ||||| ||||| || || || ||||| || || ||||| ||||||||||||| || Sbjct 189265 TTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAG 189206 Query 167773 GTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGAC 167832 |||||||| || || |||||| ||||| | || || | || || || ||||| ||||| Sbjct 189205 TTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGAC 189146 Query 167833 GCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGC 167892 | ||||| || ||||||||||||||||| ||| | | |||| || |||| | || Sbjct 189145 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGC 189086 Query 167893 AATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTT 167952 |||||||||| ||| ||||| |||||| | | |||||||||||| ||||| || || Sbjct 189085 TATCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 189026 Query 167953 CAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATT 168012 | || ||| | | || || | || ||||||||||| |||||||| |||||||| || Sbjct 189025 CCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTT 188966 Query 168013 CTGGTCTCAAATTTTTGGTATTGCTTT 168039 ||||| ||||| ||||| ||||||| Sbjct 188965 TTGGTCCCAAATCTTTGGGGTTGCTTT 188939 >seq1263 Length=120960 Score = 275 bits (304), Expect = 7e-69 Identities = 402/565 (71%), Gaps = 8/565 (1%) Strand=Plus/Plus Query 167377 TGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATAC 167436 ||| ||| | || | || |||||| |||| || || || ||||| || |||||||| Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 167437 CCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTTTCTCACGGCAGCAGTGT 167492 || || ||||| ||||| | ||| ||| ||| ||||| | || || ||||| | Sbjct 54866 TCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTT 54921 Query 167493 CAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGG 167552 | |||||||| | | | | ||||| | | |||| ||||||||||| | || | Sbjct 54922 CGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAG 54981 Query 167553 GGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAG 167612 | ||||| | | |||||||| | || || || ||| | ||||| || |||||||| | Sbjct 54982 GAGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCG 55041 Query 167613 CCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCC 167672 | || | || ||||| |||||| | || |||||||| | | | || | | Sbjct 55042 CTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGC 55101 Query 167673 GTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCA 167732 | ||||| ||||| || || || |||| ||| |||||||| ||||| ||||| || || | Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161 Query 167733 TCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATAT 167792 | ||||| || || ||||| ||||||||||||| || |||||||| || || |||| Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221 Query 167793 TTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGA 167852 || ||||| | || || | || || || ||||| ||||| | ||||| || ||||||| Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281 Query 167853 TGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAG 167912 |||||||||| ||| | | |||| || |||| | || |||||||||| || |||| Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341 Query 167913 AGAATACTCTGTATGAAGATGGTGA 167937 | |||||| | | |||||||||||| Sbjct 55342 AAAATACTTTATTTGAAGATGGTGA 55366 >seq587 Length=401750 Score = 109 bits (120), Expect = 6e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 166863 TGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCAT 166922 |||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| || | Sbjct 44393 TGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 44452 Query 166923 CATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCT 166982 | ||| |||| |||||||| | || |||| || ||| | | || | || | || Sbjct 44453 AGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCT 44512 Query 166983 GGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040 ||||||||||| ||||| || | |||| |||| ||||| || |||| || |||||| Sbjct 44513 TGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 >seq37 Length=530226 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/279 (68%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 167912 GAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACT 167971 || |||| | | | |||||||||||| || || || || || ||| || | || Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865 Query 167972 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGT 168031 || | | ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924 Query 168032 ATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGA 168091 || ||| |||||| ||||||| || || |||||| || || | || | || Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984 Query 168092 CTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTT 168151 | |||| || || | | | ||||||| || | || || || | |||| ||| Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044 Query 168152 GTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTT 168190 || || || ||| | | ||||| || ||||| || ||| Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567035106682400