Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq752 329 4e-85
seq1263 275 7e-69
seq587 109 6e-19
seq37 95.1 1e-14
>seq752
Length=193215
Score = 329 bits (364), Expect = 4e-85
Identities = 488/687 (71%), Gaps = 11/687 (2%)
Strand=Plus/Minus
Query 167360 TTACTT---CTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416
|||||| || ||||| ||| ||| | || | || |||||| |||| || || ||
Sbjct 189621 TTACTTANGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACC 189562
Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAA 167472
||||| || |||||||| || || ||||| ||||| | ||| ||| ||| ||
Sbjct 189561 TTTGTAACTTCATGGTATACTCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AA 189506
Query 167473 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 167532
||| | || || ||||| || |||||||| | | | | ||||| | | ||||
Sbjct 189505 TTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACT 189446
Query 167533 TTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGC 167592
|| |||||||| | || || ||||| | | |||||||| | || || || ||| |
Sbjct 189445 ATGAGGTCCTGAAGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGAC 189386
Query 167593 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGAT 167652
||||| || |||||||| | || | || ||||| |||||| | || ||| |||| |
Sbjct 189385 GTTTGTTGCTCTCCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACT 189326
Query 167653 AAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGT 167712
| | || | || ||||| ||||| || || || |||| ||| ||||||||
Sbjct 189325 TGCTCGGTCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGT 189266
Query 167713 CTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTC 167772
||||| ||||| || || || ||||| || || ||||| ||||||||||||| ||
Sbjct 189265 TTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAG 189206
Query 167773 GTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGAC 167832
|||||||| || || |||||| ||||| | || || | || || || ||||| |||||
Sbjct 189205 TTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGAC 189146
Query 167833 GCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGC 167892
| ||||| || ||||||||||||||||| ||| | | |||| || |||| | ||
Sbjct 189145 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGC 189086
Query 167893 AATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTT 167952
|||||||||| ||| ||||| |||||| | | |||||||||||| ||||| || ||
Sbjct 189085 TATCCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 189026
Query 167953 CAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATT 168012
| || ||| | | || || | || ||||||||||| |||||||| |||||||| ||
Sbjct 189025 CCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTT 188966
Query 168013 CTGGTCTCAAATTTTTGGTATTGCTTT 168039
||||| ||||| ||||| |||||||
Sbjct 188965 TTGGTCCCAAATCTTTGGGGTTGCTTT 188939
>seq1263
Length=120960
Score = 275 bits (304), Expect = 7e-69
Identities = 402/565 (71%), Gaps = 8/565 (1%)
Strand=Plus/Plus
Query 167377 TGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCTGGTATAC 167436
||| ||| | || | || |||||| |||| || || || ||||| || ||||||||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 167437 CCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTTTCTCACGGCAGCAGTGT 167492
|| || ||||| ||||| | ||| ||| ||| ||||| | || || ||||| |
Sbjct 54866 TCATGGATTGGC---TAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTT 54921
Query 167493 CAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGG 167552
| |||||||| | | | | ||||| | | |||| ||||||||||| | || |
Sbjct 54922 CGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAG 54981
Query 167553 GGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAG 167612
| ||||| | | |||||||| | || || || ||| | ||||| || |||||||| |
Sbjct 54982 GAGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCG 55041
Query 167613 CCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCC 167672
| || | || ||||| |||||| | || |||||||| | | | || | |
Sbjct 55042 CTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGC 55101
Query 167673 GTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCA 167732
| ||||| ||||| || || || |||| ||| |||||||| ||||| ||||| || || |
Sbjct 55102 GACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGA 55161
Query 167733 TCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATAT 167792
| ||||| || || ||||| ||||||||||||| || |||||||| || || ||||
Sbjct 55162 TTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATAT 55221
Query 167793 TTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGA 167852
|| ||||| | || || | || || || ||||| ||||| | ||||| || |||||||
Sbjct 55222 TTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGA 55281
Query 167853 TGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAG 167912
|||||||||| ||| | | |||| || |||| | || |||||||||| || ||||
Sbjct 55282 TGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAG 55341
Query 167913 AGAATACTCTGTATGAAGATGGTGA 167937
| |||||| | | ||||||||||||
Sbjct 55342 AAAATACTTTATTTGAAGATGGTGA 55366
>seq587
Length=401750
Score = 109 bits (120), Expect = 6e-19
Identities = 131/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 166863 TGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCAT 166922
|||| | | | | ||||| ||||| |||||||| || |||||||| |||||||| || |
Sbjct 44393 TGCTTTAGATATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGT 44452
Query 166923 CATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCT 166982
| ||| |||| |||||||| | || |||| || ||| | | || | || | ||
Sbjct 44453 AGTTGATAGTCAAGGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCT 44512
Query 166983 GGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCT 167040
||||||||||| ||||| || | |||| |||| ||||| || |||| || ||||||
Sbjct 44513 TGGTATGGAAGTTATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
>seq37
Length=530226
Score = 95.1 bits (104), Expect = 1e-14
Identities = 189/279 (68%), Gaps = 1/279 (0%)
Strand=Plus/Plus
Query 167912 GAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACT 167971
|| |||| | | | |||||||||||| || || || || || ||| || | ||
Sbjct 49806 GAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAACC 49865
Query 167972 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGT 168031
|| | | ||||||||||| |||||||| |||||||| || ||||| ||||| |||||
Sbjct 49866 CAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGGG 49924
Query 168032 ATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGA 168091
|| ||| |||||| ||||||| || || |||||| || || | || | ||
Sbjct 49925 GTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGGT 49984
Query 168092 CTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTT 168151
| |||| || || | | | ||||||| || | || || || | |||| |||
Sbjct 49985 TTATGGATGAGAGCTCCTAGAGTAGTCGGTCTGGCTTTGAACCTACGCACCTATGGCTTC 50044
Query 168152 GTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTT 168190
|| || || ||| | | ||||| || ||||| || |||
Sbjct 50045 GTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATTT 50083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567035106682400
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