Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq47 93.3 5e-14
seq235 87.8 2e-12
seq2646 86.0 7e-12
seq91 86.0 7e-12
seq363 84.2 2e-11
seq396 82.4 8e-11
>seq47
Length=919245
Score = 93.3 bits (102), Expect = 5e-14
Identities = 74/88 (84%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320
||||||||| ||||||||||||||||||||||||| | ||| |||||| | || || |
Sbjct 308546 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 308487
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
|||||||||| || ||||| |||||||
Sbjct 308486 GCGTGGGTTCAAATCCCACTTCTGACAA 308459
>seq235
Length=313614
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/95 (81%), Gaps = 6/95 (6%)
Strand=Plus/Plus
Query 126257 CTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC 126316
|||| | ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||
Sbjct 136715 CTATACAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTC 136772
Query 126317 GGGA----GCGTGGGTTCGAACCCCACACCTGACA 126347
| || |||||||||| || ||||| ||||||
Sbjct 136773 GTGAGAGGGCGTGGGTTCAAATCCCACTTCTGACA 136807
>seq2646
Length=140428
Score = 86.0 bits (94), Expect = 7e-12
Identities = 79/99 (80%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 124645 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 124588
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||| || |||||| ||| ||| || | ||| ||| |||
Sbjct 124587 TTCAAATCCCACAGCTGTCAAGTTGGTTTTGCAATGTTT 124549
>seq91
Length=425796
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||| | || || | |||
Sbjct 267254 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 267195
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 267194 TGGGTTCAAATCCCACTTCTGACA 267171
>seq363
Length=250143
Score = 84.2 bits (92), Expect = 2e-11
Identities = 77/96 (80%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGAG 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | |
Sbjct 119826 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGGG 119769
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||| || ||||| ||||||| | |||||
Sbjct 119768 CGTGGGTTCAAATCCCACTTCTGACAAGATTTTATT 119733
>seq396
Length=242455
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 192372 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 192315
Query 126325 GGGTTCGAACCCCACACCTGACAA 126348
|||||| || |||||| ||| |||
Sbjct 192314 GGGTTCAAATCCCACAGCTGTCAA 192291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556667506655560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |