Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq887 190 4e-43 seq318 104 5e-17 seq4121 95.1 2e-14 seq12227 93.3 9e-14 seq1276 93.3 9e-14 seq1167 93.3 9e-14 seq420 93.3 9e-14 seq270 93.3 9e-14 seq267 93.3 9e-14 seq257 93.3 9e-14 seq21 93.3 9e-14 >seq887 Length=362991 Score = 190 bits (210), Expect = 4e-43 Identities = 219/292 (75%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 ||| |||||| |||||||||| || | |||||| | ||| | || | |||||||| Sbjct 262325 TGATTTCATCAACAAGGAGCTTATATTGTTCTCGATGGCGGATCTTCAGAGGTCTATTCC 262384 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 |||| |||||||||||||| |||| | ||||| || || | ||||||| | Sbjct 262385 GTCAATGGTTGATGGCCTCAAGCCCGGGCAGAGGAAGATTCTTTTCTGCTCATTCAAAAG 262444 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | ||| ||||| ||||| |||||||| || |||||||| || || ||||| Sbjct 262445 GAATTTTGTTAAAGAAGCAAAGGTTGCTCAGTTCTCAGGTTATGTTTCTGAGCATTCTGC 262504 Query 218697 CTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 || ||||| |||||||| |||| |||| || ||||| |||| ||||||||||| | || Sbjct 262505 TTATCATCATGGTGAGCAAAGTCTTGCA-AGTACCATTTTAGGGATGGCACAGGATTTTG 262563 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 |||| ||||||||||| ||| | || | || || |||||||||||| |||| Sbjct 262564 TGGGTAGTAACAACATCAACCTTCTCCAACCTAATGGTCAGTTTGGTACTCG 262615 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 336284 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 336225 Query 142563 CCCCAC 142568 |||||| Sbjct 336224 CCCCAC 336219 >seq318 Length=266665 Score = 104 bits (114), Expect = 5e-17 Identities = 540/850 (64%), Gaps = 19/850 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| |||| || ||||| |||||||| |||| || ||||| | Sbjct 55613 TCGAAGAAATTGGTCTTCCCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCC 55672 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||| ||| ||| || || | | | ||| |||||||| ||||| | Sbjct 55673 ACACCGTATATCTTCCCGCAGCCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATG 55732 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||| | || || || | || || || | Sbjct 55733 TACTGGCTCATAAGGTCGCCGTTCATGCCCACCAAGGCGCACGGCAGCGCGTCGCACACA 55792 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| || | || || ||| || || ||||||| | || | |||| Sbjct 55793 AACTCCCTCTCGATGTCCACCGCATCCCTAACGATCCCCTTCACGCGCTCCTCACTCAGC 55852 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTG--GTGCAGACCCTCGTCG 251859 || ||| |||| | ||| || | || || || || | ||| ||||||||||| Sbjct 55853 TTCGTCTTCAGCAGTTCGTAGAGCAAGCAAGCGAA---GTCGCAGTGTAGACCCTCGTCT 55909 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||| || ||||| || | ||| || ||||| | ||| || ||| | |||||| Sbjct 55910 CGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAG 55969 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 || || ||||| || || ||||| | | |||||||| || | | || | || Sbjct 55970 AATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAACGCGATCAGC 56029 Query 251980 CGCTCAGCAAACGACTTGTC-CTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT-TC 252037 ||||| || || || | | | || | |||| | ||||| | |||||||| | Sbjct 56030 CGCTCGGCGAAGCTCTCGGCACCGC-CGATCCACTTGAGAGCCCAATCCGCCTTCTTCTT 56088 Query 252038 CAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCG 252096 || ||| ||| | | ||||| |||| ||||| |||| ||| | ||||| | Sbjct 56089 CA--CGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTG 56146 Query 252097 ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGG 252156 || | || || ||||| ||||||||| || || ||| || || |||||| Sbjct 56147 ATATAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCAATGGCGATCTGG 56206 Query 252157 TAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATG 252216 | ||||||| || || | | | ||| ||| | ||| |||| | Sbjct 56207 AAGCCATAGAAGGCTCGGGCTTCCGCGACCTGGACCTCCTTCATGAAGCGAGCAGCAAGG 56266 Query 252217 TTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGA 252276 ||||| | || || || ||| | | || ||||| | || | | |||| || || Sbjct 56267 TTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAAGCGAGGACGTGGGTGATAAAATGG 56326 Query 252277 CGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTT 252334 ||||| | ||| |||| ||| ||||| | | |||||| ||||| || | Sbjct 56327 CGCTCGCCATCGGTGAGGGAGTC---CCAGTGGCGGAGGTCCTG--GGAGAGGTCGACCT 56381 Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACT 252394 | || | |||||||| | || | | |||||||||||||| | | | | ||||||| Sbjct 56382 CCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTCCCAGATTTGGGGGTACT 56441 Query 252395 TGATTGGGAA 252404 ||| ||||| Sbjct 56442 GGATCGGGAA 56451 >seq4121 Length=42422 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 9150 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 9209 Query 142562 GCCCCAC 142568 ||||||| Sbjct 9210 GCCCCAC 9216 >seq12227 Length=2446 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2433 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2374 Query 142563 CCCCAC 142568 |||||| Sbjct 2373 CCCCAC 2368 >seq1276 Length=226628 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 57890 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57949 Query 142563 CCCCAC 142568 |||||| Sbjct 57950 CCCCAC 57955 >seq1167 Length=142977 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 26195 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26136 Query 142563 CCCCAC 142568 |||||| Sbjct 26135 CCCCAC 26130 >seq420 Length=385775 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7249 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7190 Query 142563 CCCCAC 142568 |||||| Sbjct 7189 CCCCAC 7184 >seq270 Length=391037 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 363224 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 363165 Query 142563 CCCCAC 142568 |||||| Sbjct 363164 CCCCAC 363159 >seq267 Length=294602 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 62904 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 62963 Query 142563 CCCCAC 142568 |||||| Sbjct 62964 CCCCAC 62969 >seq257 Length=292223 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 56820 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56879 Query 142563 CCCCAC 142568 |||||| Sbjct 56880 CCCCAC 56885 >seq21 Length=601505 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 406861 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 406802 Query 142563 CCCCAC 142568 |||||| Sbjct 406801 CCCCAC 406796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027471105623729