Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq887 190 4e-43
seq318 104 5e-17
seq4121 95.1 2e-14
seq12227 93.3 9e-14
seq1276 93.3 9e-14
seq1167 93.3 9e-14
seq420 93.3 9e-14
seq270 93.3 9e-14
seq267 93.3 9e-14
seq257 93.3 9e-14
seq21 93.3 9e-14
>seq887
Length=362991
Score = 190 bits (210), Expect = 4e-43
Identities = 219/292 (75%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576
||| |||||| |||||||||| || | |||||| | ||| | || | ||||||||
Sbjct 262325 TGATTTCATCAACAAGGAGCTTATATTGTTCTCGATGGCGGATCTTCAGAGGTCTATTCC 262384
Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636
|||| |||||||||||||| |||| | ||||| || || | ||||||| |
Sbjct 262385 GTCAATGGTTGATGGCCTCAAGCCCGGGCAGAGGAAGATTCTTTTCTGCTCATTCAAAAG 262444
Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696
||| | ||| ||||| ||||| |||||||| || |||||||| || || |||||
Sbjct 262445 GAATTTTGTTAAAGAAGCAAAGGTTGCTCAGTTCTCAGGTTATGTTTCTGAGCATTCTGC 262504
Query 218697 CTACCATCACGGTGAGCAGAGTC-TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755
|| ||||| |||||||| |||| |||| || ||||| |||| ||||||||||| | ||
Sbjct 262505 TTATCATCATGGTGAGCAAAGTCTTGCA-AGTACCATTTTAGGGATGGCACAGGATTTTG 262563
Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807
|||| ||||||||||| ||| | || | || || |||||||||||| ||||
Sbjct 262564 TGGGTAGTAACAACATCAACCTTCTCCAACCTAATGGTCAGTTTGGTACTCG 262615
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 336284 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 336225
Query 142563 CCCCAC 142568
||||||
Sbjct 336224 CCCCAC 336219
>seq318
Length=266665
Score = 104 bits (114), Expect = 5e-17
Identities = 540/850 (64%), Gaps = 19/850 (2%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
||||||||||| | ||| |||| || ||||| |||||||| |||| || ||||| |
Sbjct 55613 TCGAAGAAATTGGTCTTCCCCTGAAGCGAGATCAGCTCCATCCAGTCAAACGGGTTGGCC 55672
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|| ||| ||| ||| || || | | | ||| |||||||| ||||| |
Sbjct 55673 ACACCGTATATCTTCCCGCAGCCGAGCGCCCCCAGCAAGCGATCTGCCACGAACTCGATG 55732
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| | ||| || || ||||||||| | || || || | || || || |
Sbjct 55733 TACTGGCTCATAAGGTCGCCGTTCATGCCCACCAAGGCGCACGGCAGCGCGTCGCACACA 55792
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802
|| ||| | ||| || | || || ||| || || ||||||| | || | ||||
Sbjct 55793 AACTCCCTCTCGATGTCCACCGCATCCCTAACGATCCCCTTCACGCGCTCCTCACTCAGC 55852
Query 251803 TTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTG--GTGCAGACCCTCGTCG 251859
|| ||| |||| | ||| || | || || || || | ||| |||||||||||
Sbjct 55853 TTCGTCTTCAGCAGTTCGTAGAGCAAGCAAGCGAA---GTCGCAGTGTAGACCCTCGTCT 55909
Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919
|| ||| || ||||| || | ||| || ||||| | ||| || ||| | ||||||
Sbjct 55910 CGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCCGCGCTTCTTCAGCCAG 55969
Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979
|| || ||||| || || ||||| | | |||||||| || | | || | ||
Sbjct 55970 AATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCAAGCGAACGCGATCAGC 56029
Query 251980 CGCTCAGCAAACGACTTGTC-CTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT-TC 252037
||||| || || || | | | || | |||| | ||||| | |||||||| |
Sbjct 56030 CGCTCGGCGAAGCTCTCGGCACCGC-CGATCCACTTGAGAGCCCAATCCGCCTTCTTCTT 56088
Query 252038 CAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCG 252096
|| ||| ||| | | ||||| |||| ||||| |||| ||| | ||||| |
Sbjct 56089 CA--CGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTTCTCATCGGAGTCCTTG 56146
Query 252097 ATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGG 252156
|| | || || ||||| ||||||||| || || ||| || || ||||||
Sbjct 56147 ATATAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCAATGGCGATCTGG 56206
Query 252157 TAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATG 252216
| ||||||| || || | | | ||| ||| | ||| |||| |
Sbjct 56207 AAGCCATAGAAGGCTCGGGCTTCCGCGACCTGGACCTCCTTCATGAAGCGAGCAGCAAGG 56266
Query 252217 TTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGA 252276
||||| | || || || ||| | | || ||||| | || | | |||| || ||
Sbjct 56267 TTCTCGAGGACGATTCCGTCGGAGGCGGCGAAGAAAGCGAGGACGTGGGTGATAAAATGG 56326
Query 252277 CGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTT 252334
||||| | ||| |||| ||| ||||| | | |||||| ||||| || |
Sbjct 56327 CGCTCGCCATCGGTGAGGGAGTC---CCAGTGGCGGAGGTCCTG--GGAGAGGTCGACCT 56381
Query 252335 CTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACT 252394
| || | |||||||| | || | | |||||||||||||| | | | | |||||||
Sbjct 56382 CCTCAGCAGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTCCCAGATTTGGGGGTACT 56441
Query 252395 TGATTGGGAA 252404
||| |||||
Sbjct 56442 GGATCGGGAA 56451
>seq4121
Length=42422
Score = 95.1 bits (104), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 9150 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 9209
Query 142562 GCCCCAC 142568
|||||||
Sbjct 9210 GCCCCAC 9216
>seq12227
Length=2446
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 2433 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2374
Query 142563 CCCCAC 142568
||||||
Sbjct 2373 CCCCAC 2368
>seq1276
Length=226628
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 57890 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 57949
Query 142563 CCCCAC 142568
||||||
Sbjct 57950 CCCCAC 57955
>seq1167
Length=142977
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 26195 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 26136
Query 142563 CCCCAC 142568
||||||
Sbjct 26135 CCCCAC 26130
>seq420
Length=385775
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 7249 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7190
Query 142563 CCCCAC 142568
||||||
Sbjct 7189 CCCCAC 7184
>seq270
Length=391037
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 363224 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 363165
Query 142563 CCCCAC 142568
||||||
Sbjct 363164 CCCCAC 363159
>seq267
Length=294602
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 62904 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 62963
Query 142563 CCCCAC 142568
||||||
Sbjct 62964 CCCCAC 62969
>seq257
Length=292223
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 56820 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 56879
Query 142563 CCCCAC 142568
||||||
Sbjct 56880 CCCCAC 56885
>seq21
Length=601505
Score = 93.3 bits (102), Expect = 9e-14
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||
Sbjct 406861 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 406802
Query 142563 CCCCAC 142568
||||||
Sbjct 406801 CCCCAC 406796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027471105623729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |