Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1034 107 1e-18 seq1057 89.7 4e-13 seq5240 82.4 5e-11 >seq1034 Length=134858 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| | || || ||||| ||||| ||||| || |||| ||| | || Sbjct 72775 ATGCAGATATTCGTGAAGACCTTAACTGGCAAGACCATCACGCTGGAGGTGGAGAGCTCA 72834 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| || |||||||| | ||| | |||| Sbjct 72835 GACACCATTGACAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATCCCTCCAGACCAG 72894 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| ||||| || |||||| | ||| |||| || ||||| Sbjct 72895 CAGAGGTTGATCTTTGCTGGAAAACAGCTTGAAGATGGCAGGACTTTGGCAGACTACAAC 72954 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| ||| | || | ||| | || || || Sbjct 72955 ATACAGAAGGAATCAACTCTGCATCTTGTCCTCCGTCTTCGTGGTGG 73001 >seq1057 Length=141302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | || || || || ||||| || || || |||| ||| | || Sbjct 136267 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACTATAACTTTGGAGGTGGAGAGCTCA 136208 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| || ||||| || | ||| |||| Sbjct 136207 GATACCATTGACAATGTAAAGACCAAAATTCAGGACAAAGAAGGGATTCCTCCGGACCAG 136148 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || ||||||||||| ||||| || || ||| | || |||| || ||||| Sbjct 136147 CAAAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCAGGACCTTGGCTGACTACAAC 136088 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 |||||||||||||| ||||| ||| Sbjct 136087 ATTCAGAAGGAATCAACTCTCCAT 136064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| | || || ||||| || || |||| || || Sbjct 136495 ATGCAGATTTTTGTTAAAACCCTTACTGGAAAAACAATAACAATGGAGGTTGAGAGTTCA 136436 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| ||||| ||||| ||||| | | | | ||| Sbjct 136435 GATACGATTGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGCATCCTACCAGATCAA 136376 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 | ||| | ||||||||||| || ||||| |||||| || ||| | || || |||||| Sbjct 136375 CGGAGGATCATCTTTGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTGCAGACTACAAT 136316 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| || |||||| |||| Sbjct 136315 ATCCAGAAGGAATCAACACTTCATTTGGT 136287 >seq5240 Length=30785 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | ||||| || || || ||| |||| ||| | | Sbjct 4589 AATGCAGATCTTTGTGAAGACGCTGACGGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 4648 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | | | ||| ||| || ||||| ||||| | || | |||| Sbjct 4649 GGACACGATTGACAACGTGAAGGCAAAGATCCAGGATAAGGAGGGGATCCCGCCAGACCA 4708 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||| || || || || || || ||| || ||| |||| |||||||| Sbjct 4709 GCAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAGGATGGAAGGACTCTGGCTGATTACAA 4768 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| |||||||| || || ||||| | || || ||| | || ||||| Sbjct 4769 TATCCAGAAGGAGTCGACCCTTCACCTTGTCTTGCGTCTCCGTGGAGG 4816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358003598145226