Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq318 295 1e-74 seq715 215 1e-50 seq2451 165 2e-35 >seq318 Length=266665 Score = 295 bits (326), Expect = 1e-74 Identities = 594/870 (68%), Gaps = 22/870 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| | |||||| |||||||||||||| || |||| |||||| || Sbjct 56446 GATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGC 56387 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| | ||||| || ||||| | ||| |||||| || || | || ||| Sbjct 56386 TGAGGAGGTCGACCTCTCCCAGGACCTCCGCCA-CTGGGACTCCCTCACCGATGGCGAGC 56328 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 ||| ||| || | || || |||||||||||||| ||||| || ||| |||| Sbjct 56327 GCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGA 56268 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| || | | |||||||| ||||| ||| | || || || |||||| |||| Sbjct 56267 ACCTTGCTGCTCGCTTCATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTCTATGGCT 56208 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 ||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | || || | Sbjct 56207 TCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTATA 56148 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 || ||| ||| ||| ||| || ||| | ||||| || | | |||||||| | | Sbjct 56147 TCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGCGTGA 56088 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 ||||||||||||| ||||| ||||| ||||||| || |||| | |||| |||| Sbjct 56087 AGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGTGCCGA---GAGCTTCGCCGAGC 56031 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 ||||| | || || | ||||||||| || |||||||| || ||| | | || | Sbjct 56030 GGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCGATAT 55971 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 ||||||| ||| || | | ||||| ||||| ||||||||||||||| | ||| Sbjct 55970 TCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATCTCGC 55911 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| || || | ||||| || ||| | || | ||| | || | | | Sbjct 55910 GAGACGAGGGTCTACACTGCGACTTCGCTTGCTTGCTCT--ACGA-ACTGCTGAAGACGA 55854 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||||||| || || ||| | | ||| || ||||| ||||||| ||||| Sbjct 55853 AGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACATCGAGAGGGAGT 55794 Query 42943 TCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 | | | ||||| ||||| || |||| ||||||||| |||||| ||| || || Sbjct 55793 TTGTGTGCGACGCGCTG-CCGTGCGCCTTGGTGGGCATGAACGGCGACCTTATGAGCCAG 55735 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACA-A 43060 |||||| ||| ||| || | ||| | || | | || ||| || || | | | Sbjct 55734 TACATCGAGTTCGTGGCAG---ATCGCTTG---CTGGGGGCGCTCGGCTGCGGGAAGATA 55681 Query 43061 CACGCCGTG-----CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 ||| ||| ||| || |||| |||||| |||||| | |||| |||||||| Sbjct 55680 TACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGACCAAT 55621 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||||| | |||| ||| |||||| Sbjct 55620 TTCTTCGAGAAAAGGGTCGGCGAGTACCAG 55591 >seq715 Length=381403 Score = 215 bits (238), Expect = 1e-50 Identities = 568/864 (66%), Gaps = 11/864 (1%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| ||| |||||| |||||||||||||| || |||| |||||| || Sbjct 115813 GATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGC 115754 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||| || || ||||| | |||| | || || | | |||| Sbjct 115753 CGAGGAGGTCGACTTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCG 115694 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| || | || || |||||||||||||| || ||||| ||| || || Sbjct 115693 CCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAA 115634 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 || ||| ||||||||||| ||| | ||| ||||| || ||| |||||||| Sbjct 115633 TCTCGCCGGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCTTATACGGCTT 115574 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| ||||| |||||| | ||||||||| |||| |||||| | || ||| | Sbjct 115573 CCAGATCGCCATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCGAAACCTACGT 115514 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | |||| || ||| ||| || ||| | ||||| || ||| |||| ||| || | Sbjct 115513 CAAGGATTCCAATGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCA 115454 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA--CGTTCGGCGAG 42701 ||||||||| || |||||||| || |||||||| | || ||| |||||| ||| Sbjct 115453 GAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA-----CGGATCCAAGTCGTTCGCGGAG 115399 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 |||| | || || | ||| ||||| || |||||||| || |||| | | || Sbjct 115398 CGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATA 115339 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||| | || || || || |||||| || | || ||||||||||| | ||| Sbjct 115338 TTTTGGTTGAAAAAG-CGGGGTTGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCG 115280 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 | || || || || || | || || || || | || ||| | || ||| Sbjct 115279 CGAGATGAAGGCCTTCACTGCGATTTCGCGTG---CTTGCTCTACGGATTGCTGAGGATG 115223 Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941 |||| ||||| || ||| ||| ||| | || || ||||| ||||||| |||| Sbjct 115222 AAGCTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGGATATCGAGAGGGAG 115163 Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || | | | |||||| | |||| || |||||| || || ||| || || Sbjct 115162 TTTGTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTGAACTTATGAGCCAG 115103 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 || ||| ||| ||| || || | || ||| | | || | | | | ||||| Sbjct 115102 TATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACGGTAGGATGTACAAT 115043 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 | || || || || | |||||| || |||||| | || ||||| || || ||| Sbjct 115042 GTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGGAAGACGAATTTCTTC 114983 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 |||||| | |||| || |||||| Sbjct 114982 GAGAAGAGGGTCGGTGAGTACCAG 114959 >seq2451 Length=68748 Score = 165 bits (182), Expect = 2e-35 Identities = 356/532 (67%), Gaps = 23/532 (4%) Strand=Plus/Plus Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677 ||||| || ||| |||||||| | |||||||||||||| ||||| ||||| |||||||| Sbjct 67931 GCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGAC 67990 Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737 || |||| | |||| |||| ||||| |||| || |||| |||| || ||| Sbjct 67991 GGTGCCGAG---AGCTTCGCCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATTTTC 68047 Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTC 42797 ||||| || ||| | | || |||||||| ||| || | | ||||| |||||| Sbjct 68048 TTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTC 68107 Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857 ||||||||||| ||| | ||| | |||||||| || || | ||||| || ||| | Sbjct 68108 ACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTGCTTG 68167 Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917 || | ||| | |||| ||||||| || || ||||| | | Sbjct 68168 CTCT--ACGA----------ACTGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCATTAGG 68215 Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCT----CACGCAGTCGCTGCCCGTGTCCCTGGT 42973 || || ||||| ||||||| |||||| | ||||| |||||| || |||| Sbjct 68216 GACGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCA----CTGCCCTGCGCCTTGGT 68271 Query 42974 CGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTG 43033 ||||||||| |||||| ||| || |||||||| ||| ||| || ||| | ||| | Sbjct 68272 GGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGACTGGTTGCTGGG 68331 Query 43034 CCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACAT 43093 | |||| | | | || | | ||| || |||| |||||| || Sbjct 68332 GGCGCTGGGCTGCGGGAAGATATATGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGAT 68391 Query 43094 CTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||| | |||| |||||||| || |||||||| | |||| ||| |||||| Sbjct 68392 CTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGACGAGTACCAG 68443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944011408059440