Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq318 295 1e-74
seq715 215 1e-50
seq2451 165 2e-35
>seq318
Length=266665
Score = 295 bits (326), Expect = 1e-74
Identities = 594/870 (68%), Gaps = 22/870 (3%)
Strand=Plus/Minus
Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343
|||| || ||| | |||||| |||||||||||||| || |||| |||||| ||
Sbjct 56446 GATCCAGTACCCCCAAATCTGGGAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACTGC 56387
Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402
|||||| | ||||| || ||||| | ||| |||||| || || | || |||
Sbjct 56386 TGAGGAGGTCGACCTCTCCCAGGACCTCCGCCA-CTGGGACTCCCTCACCGATGGCGAGC 56328
Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462
||| ||| || | || || |||||||||||||| ||||| || ||| ||||
Sbjct 56327 GCCATTTTATCACCCACGTCCTCGCTTTCTTCGCCGCCTCCGACGGAATCGTCCTCGAGA 56268
Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522
|||| || | | |||||||| ||||| ||| | || || || |||||| ||||
Sbjct 56267 ACCTTGCTGCTCGCTTCATGAAGGAGGTCCAGGTCGCGGAAGCCCGAGCCTTCTATGGCT 56208
Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582
||||||| ||||| |||||| | ||||| ||| ||||| | || ||| | || || |
Sbjct 56207 TCCAGATCGCCATTGAGAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTATA 56148
Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642
|| ||| ||| ||| ||| || ||| | ||||| || | | |||||||| | |
Sbjct 56147 TCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGCGTGA 56088
Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702
||||||||||||| ||||| ||||| ||||||| || |||| | |||| ||||
Sbjct 56087 AGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGGCGGTGCCGA---GAGCTTCGCCGAGC 56031
Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762
||||| | || || | ||||||||| || |||||||| || ||| | | || |
Sbjct 56030 GGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCGATAT 55971
Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822
||||||| ||| || | | ||||| ||||| ||||||||||||||| | |||
Sbjct 55970 TCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATCTCGC 55911
Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882
| |||||||| || || | ||||| || ||| | || | ||| | || | | |
Sbjct 55910 GAGACGAGGGTCTACACTGCGACTTCGCTTGCTTGCTCT--ACGA-ACTGCTGAAGACGA 55854
Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942
||| ||||||| || || ||| | | ||| || ||||| ||||||| |||||
Sbjct 55853 AGCTGAGTGAGGAGCGCGTGAAGGGGATCGTTAGGGATGCGGTGGACATCGAGAGGGAGT 55794
Query 42943 TCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001
| | | ||||| ||||| || |||| ||||||||| |||||| ||| || ||
Sbjct 55793 TTGTGTGCGACGCGCTG-CCGTGCGCCTTGGTGGGCATGAACGGCGACCTTATGAGCCAG 55735
Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACA-A 43060
|||||| ||| ||| || | ||| | || | | || ||| || || | | |
Sbjct 55734 TACATCGAGTTCGTGGCAG---ATCGCTTG---CTGGGGGCGCTCGGCTGCGGGAAGATA 55681
Query 43061 CACGCCGTG-----CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115
||| ||| ||| || |||| |||||| |||||| | |||| ||||||||
Sbjct 55680 TACGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGATCTCGCTTCAGGGGAAGACCAAT 55621
Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|| |||||||| | |||| ||| ||||||
Sbjct 55620 TTCTTCGAGAAAAGGGTCGGCGAGTACCAG 55591
>seq715
Length=381403
Score = 215 bits (238), Expect = 1e-50
Identities = 568/864 (66%), Gaps = 11/864 (1%)
Strand=Plus/Minus
Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343
|||| | ||| ||| |||||| |||||||||||||| || |||| |||||| ||
Sbjct 115813 GATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCTCCTTCTGGACAGC 115754
Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403
||||||| | ||| || || ||||| | |||| | || || | | ||||
Sbjct 115753 CGAGGAGGTCGACTTGTCCCAGGACCTCCCTCACTGGAACTCTCTCACCGCTGACGAGCG 115694
Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463
||| ||| || | || || |||||||||||||| || ||||| ||| || ||
Sbjct 115693 CCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTCCGATGGCATCGTCCTCGAAAA 115634
Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523
|| ||| ||||||||||| ||| | ||| ||||| || ||| ||||||||
Sbjct 115633 TCTCGCCGGAAGGTTCATGAAGGAGATCCAGGTGGCGGAGGCTCGTGCCTTATACGGCTT 115574
Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583
|||||| ||||| |||||| | ||||||||| |||| |||||| | || ||| |
Sbjct 115573 CCAGATCGCCATCGAGAACATTCACTCTGAGATGTATAGTCTCCTGCTCGAAACCTACGT 115514
Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643
| |||| || ||| ||| || ||| | ||||| || ||| |||| ||| || |
Sbjct 115513 CAAGGATTCCAATGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCA 115454
Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAA--CGTTCGGCGAG 42701
||||||||| || |||||||| || |||||||| | || ||| |||||| |||
Sbjct 115453 GAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA-----CGGATCCAAGTCGTTCGCGGAG 115399
Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761
|||| | || || | ||| ||||| || |||||||| || |||| | | ||
Sbjct 115398 CGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATA 115339
Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821
|| ||| | || || || || |||||| || | || ||||||||||| | |||
Sbjct 115338 TTTTGGTTGAAAAAG-CGGGGTTGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCG 115280
Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881
| || || || || || | || || || || | || ||| | || |||
Sbjct 115279 CGAGATGAAGGCCTTCACTGCGATTTCGCGTG---CTTGCTCTACGGATTGCTGAGGATG 115223
Query 42882 AAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAG 42941
|||| ||||| || ||| ||| ||| | || || ||||| ||||||| ||||
Sbjct 115222 AAGCTTAGCAAGGAACGAGTCAGGGGGATCGTGCGCGACGCGGTGGATATCGAGAGGGAG 115163
Query 42942 TTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001
|| | | | |||||| | |||| || |||||| || || ||| || ||
Sbjct 115162 TTTGTGTGCGACGCTCTGCCCTGCGCTTTGGTGGGAATGAACGGTGAACTTATGAGCCAG 115103
Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061
|| ||| ||| ||| || || | || ||| | | || | | | | |||||
Sbjct 115102 TATATCGAGTTCGTGGCGGATCGGCTGCTGGACGCTTTAGGGTACGGTAGGATGTACAAT 115043
Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121
| || || || || | |||||| || |||||| | || ||||| || || |||
Sbjct 115042 GTGGCGAATCCGTTTGATTGGATGGAGTTAATTTCGTTGCAAGGGAAGACGAATTTCTTC 114983
Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145
|||||| | |||| || ||||||
Sbjct 114982 GAGAAGAGGGTCGGTGAGTACCAG 114959
>seq2451
Length=68748
Score = 165 bits (182), Expect = 2e-35
Identities = 356/532 (67%), Gaps = 23/532 (4%)
Strand=Plus/Plus
Query 42618 GCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAG 42677
||||| || ||| |||||||| | |||||||||||||| ||||| ||||| ||||||||
Sbjct 67931 GCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCGAC 67990
Query 42678 AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTC 42737
|| |||| | |||| |||| ||||| |||| || |||| |||| || |||
Sbjct 67991 GGTGCCGAG---AGCTTCGCCGAGCGGCTGATAGCGTTCGTTTGCGTCAAGGGGATTTTC 68047
Query 42738 TTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTC 42797
||||| || ||| | | || |||||||| ||| || | | ||||| ||||||
Sbjct 68048 TTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTC 68107
Query 42798 ACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTC 42857
||||||||||| ||| | ||| | |||||||| || || | ||||| || ||| |
Sbjct 68108 ACCTTCTCGAATGAATTGATCTCGCGAGACGAGGGTCTACACTGCGACTTCGCTTGCTTG 68167
Query 42858 CTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACG 42917
|| | ||| | |||| ||||||| || || ||||| | |
Sbjct 68168 CTCT--ACGA----------ACTGAAGCTGAGTGAGGAGCGCGTGAAGGGGATCATTAGG 68215
Query 42918 GAGGCCGTGGAGATCGAGAAGGAGTTCCT----CACGCAGTCGCTGCCCGTGTCCCTGGT 42973
|| || ||||| ||||||| |||||| | ||||| |||||| || ||||
Sbjct 68216 GACGCGGTGGACATCGAGAGGGAGTTTGTGTGCGACGCA----CTGCCCTGCGCCTTGGT 68271
Query 42974 CGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTG 43033
||||||||| |||||| ||| || |||||||| ||| ||| || ||| | ||| |
Sbjct 68272 GGGCATGAACGGCGACCTTATGAGCCAGTACATCGAGTTCGTGGCAGACTGGTTGCTGGG 68331
Query 43034 CCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACAT 43093
| |||| | | | || | | ||| || |||| |||||| ||
Sbjct 68332 GGCGCTGGGCTGCGGGAAGATATATGGTGTGGCCAACCCGTTTGACTGGATGGAGCTGAT 68391
Query 43094 CTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
|||| | |||| |||||||| || |||||||| | |||| ||| ||||||
Sbjct 68392 CTCGCTTCAGGGGAAGACCAATTTCTTCGAGAAAAGGGTCGACGAGTACCAG 68443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944011408059440
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