Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq177 111 1e-19 seq379 109 4e-19 seq4991 98.7 8e-16 >seq177 Length=344453 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || ||||||||||||||||| || |||||||| || |||||||| ||| Sbjct 69156 CCACCCCTGAGGCGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCC 69097 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || || ||||| |||||||| ||||| |||||||||||||| || || Sbjct 69096 AAG-GTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGG 69038 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | ||| |||||| || || ||||| | | | || | || | ||| Sbjct 69037 AATCCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATCGTGTC-GGAGCTCTCGA 68979 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || ||||||||||| || |||||||||||||| ||||| Sbjct 68978 CCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 68930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || ||||| ||||||||||||||||||||| ||||| || Sbjct 68463 AGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGG 68404 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | || |||||||| || ||||| |||||||||||| || | | ||| Sbjct 68403 CCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCC 68344 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | |||| | || | ||| |||| || Sbjct 68343 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GGAGCTCTCGACCTCGAGAGT 68285 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || || || ||||| || |||||||| ||||| ||||| ||| Sbjct 68284 GATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATCTTT 68242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| || || || || ||||| |||||||||||||||||| || ||||| || Sbjct 68691 AGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGG 68632 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | || |||||||| || ||||| |||||||||||| || | | ||| Sbjct 68631 CCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCC 68572 Query 34030 TTGTCC 34035 |||||| Sbjct 68571 TTGTCC 68566 >seq379 Length=244149 Score = 109 bits (120), Expect = 4e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| ||||| ||||||||||| ||| ||||||||| || || ||||| ||| Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214 Query 33961 AATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| || ||||||||||||||| || ||||| ||||| |||||||| ||| || Sbjct 80213 AAG-GTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGG 80155 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | | ||| |||||| ||||| ||||| Sbjct 80154 AATACCCTCCTTGTCCTGGATTTTCGCCTTAA 80123 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| || |||||||| ||||| ||||||||| ||||||||||| || Sbjct 80045 CCTCCACGGAGCCTGAGAACCAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 79986 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015 | ||| |||| || | |||||||| || || ||||| |||||||| |||| Sbjct 79985 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCA 79931 >seq4991 Length=48504 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || |||| |||||| || |||||| ||||||||||| || | Sbjct 8819 ACCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTC-AC 8877 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| || | || || | ||||| || ||||| || || | |||||||||| | Sbjct 8878 CAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTG 8937 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATT 34075 | | || || || ||| | | |||| |||| || | | || |||||| || || Sbjct 8938 GGATGCCTTCCTTATCC-TGAATTTTGGCTT--TGACATTGTCAATGGTATCAG-AGCTT 8993 Query 34076 CGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || | || |||||||| || || |||||||||||||||||||||||| Sbjct 8994 TCCACCTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCATT 9047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396928020310738