Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq177 111 1e-19
seq379 109 4e-19
seq4991 98.7 8e-16
>seq177
Length=344453
Score = 111 bits (122), Expect = 1e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || || ||||||||||||||||| || |||||||| || |||||||| |||
Sbjct 69156 CCACCCCTGAGGCGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCC 69097
Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| || || ||||| |||||||| ||||| |||||||||||||| || ||
Sbjct 69096 AAG-GTCCTTCCATCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGG 69038
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078
| | ||| |||||| || || ||||| | | | || | || | |||
Sbjct 69037 AATCCCCTCCTTGTCCTGGATCTTAGCCTTAACGTTGTCGATCGTGTC-GGAGCTCTCGA 68979
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | ||| || ||||||||||| || |||||||||||||| |||||
Sbjct 68978 CCTCCAACGTGATCGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 68930
Score = 89.7 bits (98), Expect = 4e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || || || || || ||||| ||||||||||||||||||||| ||||| ||
Sbjct 68463 AGACGGAGTACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAATCGGCCAAGGTGCGG 68404
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| || | || |||||||| || ||||| |||||||||||| || | | |||
Sbjct 68403 CCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCC 68344
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088
|||||| || || ||| | | | |||| | || | ||| |||| ||
Sbjct 68343 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GGAGCTCTCGACCTCGAGAGT 68285
Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131
|| || || ||||| || |||||||| ||||| ||||| |||
Sbjct 68284 GATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATCTTT 68242
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
||||| || || || || ||||| |||||||||||||||||| || ||||| ||
Sbjct 68691 AGCCGGAGGACAAGGTGGAGCGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGG 68632
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| || | || |||||||| || ||||| |||||||||||| || | | |||
Sbjct 68631 CCGTCCTCGAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCCGGAGGAATCCCCTCC 68572
Query 34030 TTGTCC 34035
||||||
Sbjct 68571 TTGTCC 68566
>seq379
Length=244149
Score = 109 bits (120), Expect = 4e-19
Identities = 117/152 (77%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || ||||| ||||| ||||||||||| ||| ||||||||| || || ||||| |||
Sbjct 80273 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCC 80214
Query 33961 AATTGTCGCTC-GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| || ||||||||||||||| || ||||| ||||| |||||||| ||| ||
Sbjct 80213 AAG-GTCCTTCCGTCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGG 80155
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051
| | ||| |||||| ||||| |||||
Sbjct 80154 AATACCCTCCTTGTCCTGGATTTTCGCCTTAA 80123
Score = 82.4 bits (90), Expect = 6e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| | |||| || |||||||| ||||| ||||||||| ||||||||||| ||
Sbjct 80045 CCTCCACGGAGCCTGAGAACCAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 79986
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCA 34015
| ||| |||| || | |||||||| || || ||||| |||||||| ||||
Sbjct 79985 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCCA 79931
>seq4991
Length=48504
Score = 98.7 bits (108), Expect = 8e-16
Identities = 167/234 (71%), Gaps = 10/234 (4%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || || |||| |||||| || |||||| ||||||||||| || |
Sbjct 8819 ACCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTC-AC 8877
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
||| ||| || | || || | ||||| || ||||| || || | |||||||||| |
Sbjct 8878 CAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTG 8937
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATT 34075
| | || || || ||| | | |||| |||| || | | || |||||| || ||
Sbjct 8938 GGATGCCTTCCTTATCC-TGAATTTTGGCTT--TGACATTGTCAATGGTATCAG-AGCTT 8993
Query 34076 CGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
|| || | || |||||||| || || ||||||||||||||||||||||||
Sbjct 8994 TCCACCTCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCATT 9047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396928020310738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |