Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq715 134 3e-26
>seq715
Length=381403
Score = 134 bits (148), Expect = 3e-26
Identities = 577/890 (65%), Gaps = 44/890 (5%)
Strand=Plus/Minus
Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926
||||||| |||| ||||| || ||||| || ||||| ||||| |||||||||| |||
Sbjct 115826 TCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCT 115767
Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGCGAGAAA 242985
|||| ||||| ||||||| || | || | ||| || || ||||| ||
Sbjct 115766 CCTTCTGGACAGCCGAGGAGGT-CGACTTGTCCCAGGACCTCCCTCACTGG-------AA 115715
Query 242986 CTCAATGAC----GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC 243041
||| | || ||||| || || ||||||| ||| | || | || ||||| | |||
Sbjct 115714 CTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTC 115655
Query 243042 CGATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAAC-GGTTCCA 243099
|||||| || || | |||||||| || | || || || | || | ||| |
Sbjct 115654 CGATGGCATCGTCCTCGAAAATCTCGCCGG--AAGGTTCATGAAGGAGATCCAGGTGGCG 115597
Query 243100 GAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATAT 243159
||||| || || || | | ||| | || ||| || || ||||| |||
Sbjct 115596 GAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTAT 115537
Query 243160 GCTCTTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACG 243217
||| || |||| | || ||| ||| | ||| ||| | || ||| |||
Sbjct 115536 AGTCTCCTGCTCGAAACC--TACGTCAAGGATTCCAATGAGAAGAACAAACTCTTCCACG 115479
Query 243218 CCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAAC 243277
||||||||| | ||| || || || ||||| | ||||| | ||| ||| | ||
Sbjct 115478 CCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA-- 115421
Query 243278 CCGGT--AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335
| | | || || || || ||||| ||| |||| | | ||||| || || ||| | ||
Sbjct 115420 CGGATCCAAGTCGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTT 115361
Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395
|| || || |||||||| || |||||| || || ||| |||||||||| |
Sbjct 115360 CTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGGT-TGATGCCTGGGTTGAC 115302
Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG--AGCT 243452
| | || |||||||| ||| || || || ||||||||| | |||| ||| |||
Sbjct 115301 TTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCGCGTGCTTGCT 115242
Query 243453 -TATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACG-GTCAAACAAATCATCAC 243509
|| | ||| ||| || |||| || || | |||| |||| ||| |
Sbjct 115241 CTACGGATT----GCTGAGGATGAAGCTTAGCA--AGGAACGAGTCAGGGGGATCGTGCG 115188
Query 243510 AGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT--ATT 243567
|| || || || | ||| | ||| || | ||||||||| | || ||| |||| |
Sbjct 115187 CGACGCGGTGGATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTGC--GCTTTGGTG 115130
Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627
|| |||||| |||||| ||| | ||||| ||||| ||||| || || || | | |
Sbjct 115129 GGAATGAACGGTGAACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGAC 115070
Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687
|| | || || | | ||||||| ||| || |||| | |||||| | |||
Sbjct 115069 GCTTTAGGGTACGGTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATT 115010
Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
||| | |||||||| || || |||||||| ||| | ||| |||| || ||
Sbjct 115009 TCGTTGCAAGGGAAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCA 114960
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102487605980150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |