Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq715 134 3e-26 >seq715 Length=381403 Score = 134 bits (148), Expect = 3e-26 Identities = 577/890 (65%), Gaps = 44/890 (5%) Strand=Plus/Minus Query 242869 TCTGCAT--TCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAA 242926 ||||||| |||| ||||| || ||||| || ||||| ||||| |||||||||| ||| Sbjct 115826 TCTGCATGTTCCCGATCCAATACCCGGAAATCTGGGAGATGTACAAGAAGGCAGAGGCCT 115767 Query 242927 CCTTTTGGACCACCGAGGAAGTTCCTCTGAACGCAG-ACGTCGTCGACTGGCGCGAGAAA 242985 |||| ||||| ||||||| || | || | ||| || || ||||| || Sbjct 115766 CCTTCTGGACAGCCGAGGAGGT-CGACTTGTCCCAGGACCTCCCTCACTGG-------AA 115715 Query 242986 CTCAATGAC----GACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTC 243041 ||| | || ||||| || || ||||||| ||| | || | || ||||| | ||| Sbjct 115714 CTCTCTCACCGCTGACGAGCGCCACTTCATCACCCACGTCCTCGCATTCTTCGCCGCCTC 115655 Query 243042 CGATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGTGGAAGTAAC-GGTTCCA 243099 |||||| || || | |||||||| || | || || || | || | ||| | Sbjct 115654 CGATGGCATCGTCCTCGAAAATCTCGCCGG--AAGGTTCATGAAGGAGATCCAGGTGGCG 115597 Query 243100 GAGGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATAT 243159 ||||| || || || | | ||| | || ||| || || ||||| ||| Sbjct 115596 GAGGCTCGTGCCTTATACGGCTTCCAGATCGCCATCGAGAACATTCACTCTGAGATGTAT 115537 Query 243160 GCTCTTCTTATCGACGCGCTTATTTCA--GATGAACAAGAGCGAAACGAGCTTTTCGACG 243217 ||| || |||| | || ||| ||| | ||| ||| | || ||| ||| Sbjct 115536 AGTCTCCTGCTCGAAACC--TACGTCAAGGATTCCAATGAGAAGAACAAACTCTTCCACG 115479 Query 243218 CCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAAC 243277 ||||||||| | ||| || || || ||||| | ||||| | ||| ||| | || Sbjct 115478 CCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGAGTGGGCGCTGAAATGGATCGA-- 115421 Query 243278 CCGGT--AAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTT 243335 | | | || || || || ||||| ||| |||| | | ||||| || || ||| | || Sbjct 115420 CGGATCCAAGTCGTTCGCGGAGCGGCTCCTCGCGTTCGCTTGCGTGGAGGGGATTTTCTT 115361 Query 243336 TTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGG 243395 || || || |||||||| || |||||| || || ||| |||||||||| | Sbjct 115360 CTCTGGAAGCTTCTGCGCGATATTTTGGTTGAAAAAGCGGGGT-TGATGCCTGGGTTGAC 115302 Query 243396 TCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG--AGCT 243452 | | || |||||||| ||| || || || ||||||||| | |||| ||| ||| Sbjct 115301 TTTCTCGAACGAGTTGATCTCGCGAGATGAAGGCCTTCACTGCGATTTCGCGTGCTTGCT 115242 Query 243453 -TATGTATTCAAAGCTCCAGAACAAGC-TACCATTCGAAACG-GTCAAACAAATCATCAC 243509 || | ||| ||| || |||| || || | |||| |||| ||| | Sbjct 115241 CTACGGATT----GCTGAGGATGAAGCTTAGCA--AGGAACGAGTCAGGGGGATCGTGCG 115188 Query 243510 AGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT--ATT 243567 || || || || | ||| | ||| || | ||||||||| | || ||| |||| | Sbjct 115187 CGACGCGGTGGATATCGAGAGGGAGTTTGTGTGCGACGCTCTGCCCTGC--GCTTTGGTG 115130 Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 || |||||| |||||| ||| | ||||| ||||| ||||| || || || | | | Sbjct 115129 GGAATGAACGGTGAACTTATGAGCCAGTATATCGAGTTCGTGGCGGATCGGCTGCTGGAC 115070 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 || | || || | | ||||||| ||| || |||| | |||||| | ||| Sbjct 115069 GCTTTAGGGTACGGTAGGATGTACAATGTGGCGAATCCGTTTGATTGGATGGAGTTAATT 115010 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||| | |||||||| || || |||||||| ||| | ||| |||| || || Sbjct 115009 TCGTTGCAAGGGAAGACGAATTTCTTCGAGAAGAGGGTCGGTGAGTACCA 114960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102487605980150