Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq318 125 9e-24 seq2451 116 4e-21 seq251 86.0 7e-12 seq1699 82.4 9e-11 >seq318 Length=266665 Score = 125 bits (138), Expect = 9e-24 Identities = 175/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||||||||| || ||||| | ||| ||||||||| |||||| ||||| || || Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| ||||| || || || |||||||| || ||||| || || Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||||| | || ||||| || || | | || | | | | |||||| | || Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAA-GCTCTCGGC--ACCGCCGATCCACTTGAGAGC 56070 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| | |||||| |||| | || || || | | ||| || | ||||||| ||||| Sbjct 56071 CCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTT 56130 Query 126298 TTC 126300 || Sbjct 56131 CTC 56133 >seq2451 Length=68748 Score = 116 bits (128), Expect = 4e-21 Identities = 173/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||||||||| || ||||| | ||||||||||||| ||||| ||||| || || Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| ||||| | || || |||||||| || |||| || || Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 ||||||| | || ||||| || || | | || | ||| | |||||| | || Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAA-GCTCTCGGC--ACCGTCGATCCACTTGAGAGC 67973 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 ||| | |||||| |||| | || || || || | ||| || | |||||| ||||| Sbjct 67972 CCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTT 67913 Query 126298 TTC 126300 || Sbjct 67912 CTC 67910 >seq251 Length=297614 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/243 (70%), Gaps = 18/243 (7%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGT 10893 ||| || ||||| ||||||| ||| || || |||| |||||||||||||| || || Sbjct 249847 GTTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGT 249791 Query 10894 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCA--CCCGCA 10948 ||| || || || | || || || | ||||||||| | | | |||||| || | Sbjct 249790 CAAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCT 249731 Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTC 11007 |||| || || ||||| ||||||||||| | || || || || || ||| | | Sbjct 249730 CTGCCTT-----CCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCC 249676 Query 11008 ACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCAC 11067 || | ||| ||| | ||| ||||||| |||||| || || |||||||| || || Sbjct 249675 TTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAAC 249617 Query 11068 AAA 11070 ||| Sbjct 249616 AAA 249614 >seq1699 Length=96573 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/121 (76%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || ||||| || | ||||| || ||||| ||||| || ||| Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAACCCGAGAAGAAGA 126164 ||||| || ||||||||||| | ||||||||| ||||| || |||| || ||||||| | Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAA-CCAAGAAGAAAA 23187 Query 126165 T 126165 | Sbjct 23186 T 23186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597146251098520