Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq318 125 9e-24
seq2451 116 4e-21
seq251 86.0 7e-12
seq1699 82.4 9e-11
>seq318
Length=266665
Score = 125 bits (138), Expect = 9e-24
Identities = 175/243 (72%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| ||||||||||| || ||||| | ||| ||||||||| |||||| ||||| || ||
Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||||| |||||| ||||| || || || |||||||| || ||||| || ||
Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
|||||||| | || ||||| || || | | || | | | | |||||| | ||
Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAA-GCTCTCGGC--ACCGCCGATCCACTTGAGAGC 56070
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297
||| | |||||| |||| | || || || | | ||| || | ||||||| |||||
Sbjct 56071 CCAATCCGCCTTCTTCTTCACGCAGGGCACCATGTCGATGGCATGGAAGAGTTTGTTCTT 56130
Query 126298 TTC 126300
||
Sbjct 56131 CTC 56133
>seq2451
Length=68748
Score = 116 bits (128), Expect = 4e-21
Identities = 173/243 (71%), Gaps = 3/243 (1%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
||| ||||||||||| || ||||| | ||||||||||||| ||||| ||||| || ||
Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||||| |||||| ||||| | || || |||||||| || |||| || ||
Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237
||||||| | || ||||| || || | | || | ||| | |||||| | ||
Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAA-GCTCTCGGC--ACCGTCGATCCACTTGAGAGC 67973
Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297
||| | |||||| |||| | || || || || | ||| || | |||||| |||||
Sbjct 67972 CCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCTT 67913
Query 126298 TTC 126300
||
Sbjct 67912 CTC 67910
>seq251
Length=297614
Score = 86.0 bits (94), Expect = 7e-12
Identities = 169/243 (70%), Gaps = 18/243 (7%)
Strand=Plus/Minus
Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGT 10893
||| || ||||| ||||||| ||| || || |||| |||||||||||||| || ||
Sbjct 249847 GTTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGT 249791
Query 10894 CAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCA--CCCGCA 10948
||| || || || | || || || | ||||||||| | | | |||||| || |
Sbjct 249790 CAAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCT 249731
Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATT-TTC 11007
|||| || || ||||| ||||||||||| | || || || || || ||| | |
Sbjct 249730 CTGCCTT-----CCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCC 249676
Query 11008 ACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCAC 11067
|| | ||| ||| | ||| ||||||| |||||| || || |||||||| || ||
Sbjct 249675 TTGGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAAC 249617
Query 11068 AAA 11070
|||
Sbjct 249616 AAA 249614
>seq1699
Length=96573
Score = 82.4 bits (90), Expect = 9e-11
Identities = 92/121 (76%), Gaps = 3/121 (2%)
Strand=Plus/Minus
Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106
||||| || ||| || ||||| || | ||||| || ||||| ||||| || |||
Sbjct 23305 GCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACCT 23246
Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAACCCGAGAAGAAGA 126164
||||| || ||||||||||| | ||||||||| ||||| || |||| || ||||||| |
Sbjct 23245 GGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAA-CCAAGAAGAAAA 23187
Query 126165 T 126165
|
Sbjct 23186 T 23186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597146251098520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |