Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq4991 98.7 7e-16
seq1034 98.7 7e-16
seq6423 96.9 2e-15
seq536 87.8 1e-12
seq5240 82.4 5e-11
>seq4991
Length=48504
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | ||| ||||||||||| || || ||||| |||||||| || |
Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCA 8879
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || || ||||| | || | | ||| || || |||
Sbjct 8880 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 8939
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| |||||||| || ||||||| ||| ||| | || || ||||| |||| ||
Sbjct 8940 ATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACC 8999
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || ||||| || || || ||||| ||||| ||||||||
Sbjct 9000 TCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046
>seq1034
Length=134858
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||||| | | | ||| || |||||||| || || || || |||||||| ||
Sbjct 72319 TGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 72260
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | || | || || | ||| |||||||| ||||||| | ||| || || |
Sbjct 72259 CAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAG 72200
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || ||||||||||| ||| ||| ||| ||| | || || || || | |||| |
Sbjct 72199 GGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAA 72140
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || || ||||| || || || ||||| |||||||| |||||
Sbjct 72139 CCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | ||| | || || ||||| || ||||| |||||||| ||
Sbjct 72545 CCACCACGCAGACGGAGAACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCA 72486
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | | || || | |||||||||||| | || | | || || || ||
Sbjct 72485 AGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGAGGG 72426
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||||||||| ||| || ||| ||| | || ||||| || | | || ||
Sbjct 72425 ATTCCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATAGTGTCTGAACTCTCCACT 72366
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || || || ||||| || ||||| || |||||
Sbjct 72365 TCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 72319
>seq6423
Length=19511
Score = 96.9 bits (106), Expect = 2e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || ||||||||||| ||| ||| | | |||| || | ||
Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| | |||| ||||| |||||| || || ||||||||||| ||| |||
Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| ||| | || || |||||| | ||| || || | ||||||||| || || ||
Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || || |||||
Sbjct 10027 AGGGTTTTCACGAAGATCTGCAT 10049
>seq536
Length=459343
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| || || || || || || ||||||||||| ||| | | |||| || | |||
Sbjct 381876 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTCCAGCTGT 381817
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || ||| |||||| |||||| ||||| ||| || ||||||||||| || ||
Sbjct 381816 TTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTTC 381757
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||| ||| | || || ||||| | || || || | ||| ||||| || || |||
Sbjct 381756 GCTTTGACATTGTCAATCGTATCAGAGCTCTCGACCTCGAGGGTTATGGTCTTCCCAGTC 381697
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| |||||| || || || |||||
Sbjct 381696 AAAGTTTTGACGAAGATCTGCAT 381674
>seq5240
Length=30785
Score = 82.4 bits (90), Expect = 5e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || || || || ||||| || ||| ||| ||| | ||||| || ||
Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| || || | |||| |||||| ||||| ||||||||||||||||| || |||
Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
|| || | || || || ||| ||| || || ||||| ||||| || || ||
Sbjct 4216 GCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGTG 4157
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| || |||||
Sbjct 4156 AGGGTCTTGACAAAGATCTGCAT 4134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357271046150165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |