Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4991 98.7 7e-16 seq1034 98.7 7e-16 seq6423 96.9 2e-15 seq536 87.8 1e-12 seq5240 82.4 5e-11 >seq4991 Length=48504 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| ||||||||||| || || ||||| |||||||| || | Sbjct 8820 CCACCACGCAGACGGAGAACCAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCACCA 8879 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || || ||||| | || | | ||| || || ||| Sbjct 8880 AGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCCGGTGGG 8939 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||||||| ||| ||| | || || ||||| |||| || Sbjct 8940 ATGCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTATCAGAGCTTTCCACC 8999 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || ||||| || || || ||||| ||||| |||||||| Sbjct 9000 TCCAAAGTGATTGTTTTCCCAGTGAGTGTTTTCACAAAGATTTGCAT 9046 >seq1034 Length=134858 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | | ||| || |||||||| || || || || |||||||| || Sbjct 72319 TGCCACCTCTAAGACGAAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCAG 72260 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | || || | ||| |||||||| ||||||| | ||| || || | Sbjct 72259 CAAGCGTCCTGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTCTGCTGATCAGGAG 72200 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| ||| ||| ||| | || || || || | |||| | Sbjct 72199 GGATACCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCTGAACTTTCAA 72140 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 72139 CCTCCAGTGTTATAGTTTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 72091 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | || || ||||| || ||||| |||||||| || Sbjct 72545 CCACCACGCAGACGGAGAACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCAGCA 72486 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | |||||||||||| | || | | || || || || Sbjct 72485 AGAGTACGACCATCCTCAAGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGATCTGGAGGG 72426 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| || ||| ||| | || ||||| || | | || || Sbjct 72425 ATTCCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCGATAGTGTCTGAACTCTCCACT 72366 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || || || ||||| || ||||| || ||||| Sbjct 72365 TCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 72319 >seq6423 Length=19511 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || ||||||||||| ||| ||| | | |||| || | || Sbjct 9847 TGGAGGGTGGACTCCTTCTGTATGTTGTAGTCGGCGAGGGTCCGGCCGTCCTCCAGCTGC 9906 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| ||||| |||||| || || ||||||||||| ||| ||| Sbjct 9907 TTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGAATCTTG 9966 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || |||||| | ||| || || | ||||||||| || || || Sbjct 9967 GCCTTCACATTGTCGATGGTATCGGAAGATTCAACTTCGAGGGTAATGGTCTTCCCGGTT 10026 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 10027 AGGGTTTTCACGAAGATCTGCAT 10049 >seq536 Length=459343 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || ||||||||||| ||| | | |||| || | ||| Sbjct 381876 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCGGCCGTCCTCCAGCTGT 381817 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| |||||| |||||| ||||| ||| || ||||||||||| || || Sbjct 381816 TTCCCGGCGAATATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGGATCTTC 381757 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| | || || || | ||| ||||| || || ||| Sbjct 381756 GCTTTGACATTGTCAATCGTATCAGAGCTCTCGACCTCGAGGGTTATGGTCTTCCCAGTC 381697 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | |||||| || || || ||||| Sbjct 381696 AAAGTTTTGACGAAGATCTGCAT 381674 >seq5240 Length=30785 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || ||||| || ||| ||| ||| | ||||| || || Sbjct 4336 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTTCGGCCATCTTCCAACTGC 4277 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || || | |||| |||||| ||||| ||||||||||||||||| || ||| Sbjct 4276 TTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCCTGGATCTTG 4217 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || ||| ||| || || ||||| ||||| || || || Sbjct 4216 GCCTTGACGTTGTCGATGGTGTCGGAGGATTCCACCTCCAAGGTGATGGTCTTGCCGGTG 4157 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 4156 AGGGTCTTGACAAAGATCTGCAT 4134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357271046150165