Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq752 356 3e-93 seq1263 311 1e-79 seq587 111 2e-19 seq37 100 4e-16 seq124 91.5 2e-13 seq5090 84.2 3e-11 >seq752 Length=193215 Score = 356 bits (394), Expect = 3e-93 Identities = 464/639 (73%), Gaps = 2/639 (0%) Strand=Plus/Plus Query 6545 CCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGT 6604 |||||||| || ||||| || || ||||| |||||||| ||||| || || || |||| Sbjct 188948 CCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGG 189007 Query 6605 GTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCT 6664 || || | |||||| ||| ||||||| |||||||||||||| |||||||| ||| Sbjct 189008 GTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCT 189067 Query 6665 ACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATC 6724 ||||||||||| || ||||| || |||| || | || || | ||| || || |||||| Sbjct 189068 ACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATC 189127 Query 6725 ATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAAT 6784 |||||||| ||||| | ||||| || || || || || | || || | ||| || ||| Sbjct 189128 ATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAAT 189187 Query 6785 ATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATG 6844 || || || |||||||| |||||||||||||||| ||||| || || ||||| || Sbjct 189188 ATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATC 189247 Query 6845 AGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGA 6904 || || ||||| ||||| |||||||| ||| |||| || ||||||||||| || || || Sbjct 189248 AGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGC 189307 Query 6905 ATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGC 6963 | | || ||| || || | |||| || || | ||| |||||||| || | || | Sbjct 189308 A-ATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTAGTCCGAAAGT 189366 Query 6964 TCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCC 7023 |||||||| || ||||| | ||| || || || | |||| ||| || |||||||| Sbjct 189367 GCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAGTCAAATCTCC 189426 Query 7024 CTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGA 7083 || ||||| ||||| ||||| | | | |||||| | | | | |||||||| || Sbjct 189427 TTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGA 189486 Query 7084 TACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTA 7143 || || || || | |||||| ||||| || | ||| ||| ||| | || ||||| || Sbjct 189487 AACTGCGGCGGTTAAGAAATTGCATCCTTCCAAATAGGAACTAGCCAATCCATGAGTATA 189546 Query 7144 CCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCC 7182 ||| || || || ||||| || || | ||| || || Sbjct 189547 CCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCC 189585 >seq1263 Length=120960 Score = 311 bits (344), Expect = 1e-79 Identities = 398/546 (73%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| |||||||| |||||| ||||||| || ||||| || |||| || Sbjct 55366 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATAGCGCATAGCAGAGCC 55307 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 | || || | ||| || || |||||||||||||| ||||| | ||||| || || || Sbjct 55306 GCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 55247 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | || || | ||| || ||||| || || |||||||| |||||||||||| Sbjct 55246 CCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAAC 55187 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| ||||| || || ||||| || || || ||||| ||||| |||||||| ||| || Sbjct 55186 CAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCA 55127 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCG 6936 || || ||||||||||| || || || | | || ||| || || | ||||| || || Sbjct 55126 GAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGACG 55068 Query 6937 AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCC 6996 | ||| |||||||| || | || || |||||||| || ||||| | ||| || || || Sbjct 55067 TAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAACGTCCACAGACCGCC 55008 Query 6997 AAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGA 7056 | |||| ||| || |||||||| || ||||| ||||||||||| | | | || Sbjct 55007 CAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCATAGTAACAACAACGA 54948 Query 7057 ATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAG 7116 |||| | | | | |||||||| || || || || || | |||||| ||||| || | Sbjct 54947 ATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAA 54888 Query 7117 ATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCA 7176 ||| ||| ||| | || ||||| ||||| || || || ||||| || || | ||| Sbjct 54887 ATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCA 54828 Query 7177 ACCGCC 7182 || || Sbjct 54827 GCCCCC 54822 >seq587 Length=401750 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| | || ||||| |||| |||| | || ||||| |||||||| ||||| Sbjct 44570 AGCAGCTAGGTCCATGGGAAAGTTATGAGTATTATGTTCATGCATAACTTCCATACCAAG 44511 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | || | || | | || || | || || | ||||||||||||| ||||| | Sbjct 44510 GTTACCATGATTAATAATATCAGCTTAAGTATTAATTACACGACCTTGACTATCAACTAC 44451 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| |||||||| || |||||||| ||||| ||||| | | | | |||| | Sbjct 44450 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATATCTAAAGCAAT 44391 Query 7714 G 7714 | Sbjct 44390 G 44390 >seq37 Length=530226 Score = 100 bits (110), Expect = 4e-16 Identities = 192/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 6386 AACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTA 6445 || || ||||| |||||||| | ||| ||||| ||||| ||| |||| | | ||||| Sbjct 50082 AATTCAGGATCTTCCGCTGCACAGATTTCTTGGGAAACGAAGCCATAGGTGCGTAGGTTC 50023 Query 6446 AGTGCAAGACCAATAATACCAAT-GCTAGAGGTCCAAAGACCCATAACAGGAACAAACAG 6504 | || ||||| | | | | ||| |||| | ||| | || | ||||| Sbjct 50022 AAAGCCAGACCGACTACTCTAGGAGCTCTCA-TCCATAAACCGGTTACTAGTACAAATTA 49964 Query 6505 CATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAA 6564 |||||| ||||||| ||||| |||||| || | |||||||| || ||||| || Sbjct 49963 CATAAAAAAATGTAACCAACATTTATTGGAAAAAAAAACCCCAAAGATTTGGGACCA-AA 49905 Query 6565 ACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAA 6624 || ||||| |||||||| ||||| || || | |||| || || | |||||| || Sbjct 49904 GCGGTTAGCGGTGACCATTGAATAAGTTTCTCCAACTTGGGTTGGATTAAACGCACAAAA 49845 Query 6625 AGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTC 6663 ||||| | |||||||||||||| ||| |||| || Sbjct 49844 TGTATTAGCACAATCACCATCTTCAAATAAAATATTTTC 49806 >seq124 Length=378598 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264 ||||||| ||| ||| |||| | | || ||||||||| || ||||| ||||| | Sbjct 235898 AGTAAAGATCACTCTCCTTGTGGGTATGAATCACACAATCCGAAGTTGGATATGAAACGC 235839 Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324 | ||||| | |||| || || ||||| ||||||||||| || || ||||| Sbjct 235838 ATGTCAGCACATAACCCTTCTCCATTTGGTCGTCATCAAGGAATGACCCGTCAGATTGAT 235779 Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384 | || || ||| | || || || || || | || || || ||||| | |||||||| Sbjct 235778 CCACTGTTCCCTCAACGATCTTCCCCGCGCATGTTGAGCAAGCCCCAGCCCTGCACGAGT 235719 Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCA 10437 | ||||| || ||||| | ||||| || || || ||| ||| ||| ||| Sbjct 235718 ATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCAAGGATGAACTCATCATCA 235666 >seq5090 Length=30266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/140 (73%), Gaps = 7/140 (5%) Strand=Plus/Minus Query 8049 GAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATG 8108 |||||||| | ||||| || |||||||| | ||||||| | ||| || || Sbjct 13124 GAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACGGC----- 13070 Query 8109 CTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAG 8168 || ||||| ||||| || ||||| ||| |||||| || ||||||| | |||| || Sbjct 13069 --GCTGCAACAGGAGCTGAATATGCAACAGTGATCCAAGGGTGCATACCCAAACGGAAAC 13012 Query 8169 AAAGTTCCCACTCACGACCC 8188 |||||||||||||| |||| Sbjct 13011 TAAGTTCCCACTCACTACCC 12992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621908852705360