Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq752 356 3e-93
seq1263 311 1e-79
seq587 111 2e-19
seq37 100 4e-16
seq124 91.5 2e-13
seq5090 84.2 3e-11
>seq752
Length=193215
Score = 356 bits (394), Expect = 3e-93
Identities = 464/639 (73%), Gaps = 2/639 (0%)
Strand=Plus/Plus
Query 6545 CCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGT 6604
|||||||| || ||||| || || ||||| |||||||| ||||| || || || ||||
Sbjct 188948 CCAAAGATTTGGGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGG 189007
Query 6605 GTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCT 6664
|| || | |||||| ||| ||||||| |||||||||||||| |||||||| |||
Sbjct 189008 GTTGGGTTAAACGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCT 189067
Query 6665 ACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATC 6724
||||||||||| || ||||| || |||| || | || || | ||| || || ||||||
Sbjct 189068 ACAGTAGCACCATGGATAGCGCATAGCAGAGCCGCGCCCAATACACCGGCAACTCCCATC 189127
Query 6725 ATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAAT 6784
|||||||| ||||| | ||||| || || || || || | || || | ||| || |||
Sbjct 189128 ATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAAT 189187
Query 6785 ATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATG 6844
|| || || |||||||| |||||||||||||||| ||||| || || ||||| ||
Sbjct 189188 ATAGCCGCTACACCAAAACTGGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATC 189247
Query 6845 AGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGA 6904
|| || ||||| ||||| |||||||| ||| |||| || ||||||||||| || || ||
Sbjct 189248 AGGAATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGC 189307
Query 6905 ATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGC 6963
| | || ||| || || | |||| || || | ||| |||||||| || | || |
Sbjct 189308 A-ATTGAACAGACCGAGCAAGTTCAATTTGACGTAACATAAAACCTATTAGTCCGAAAGT 189366
Query 6964 TCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCC 7023
|||||||| || ||||| | ||| || || || | |||| ||| || ||||||||
Sbjct 189367 GCCGTGGAGAGCAACAAACGTCCACAGACCGCCCAATTGGCACCAACGAGTCAAATCTCC 189426
Query 7024 CTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGA 7083
|| ||||| ||||| ||||| | | | |||||| | | | | |||||||| ||
Sbjct 189427 TTGGGCTTCAGGACCTCATAGTAACAACAACGAATGTGCTAAACTATTGGCAGGAGTCGA 189486
Query 7084 TACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTA 7143
|| || || || | |||||| ||||| || | ||| ||| ||| | || ||||| ||
Sbjct 189487 AACTGCGGCGGTTAAGAAATTGCATCCTTCCAAATAGGAACTAGCCAATCCATGAGTATA 189546
Query 7144 CCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCC 7182
||| || || || ||||| || || | ||| || ||
Sbjct 189547 CCATGAAGTTACAAAGGTTGTACCTGTAAACCAGCCCCC 189585
>seq1263
Length=120960
Score = 311 bits (344), Expect = 1e-79
Identities = 398/546 (73%), Gaps = 2/546 (0%)
Strand=Plus/Minus
Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697
|||||||||||||| |||||||| |||||| ||||||| || ||||| || |||| ||
Sbjct 55366 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGGATAGCGCATAGCAGAGCC 55307
Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757
| || || | ||| || || |||||||||||||| ||||| | ||||| || || ||
Sbjct 55306 GCGCCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAAC 55247
Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817
|| || | || || | ||| || ||||| || || |||||||| ||||||||||||
Sbjct 55246 CCTTGGAAAAAAAGGATGAATCGAAATATAGCCGCTACACCAAAACTGGGCGCAAAGAAC 55187
Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877
|||| ||||| || || ||||| || || || ||||| ||||| |||||||| ||| ||
Sbjct 55186 CAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAAACAGCAATTGGAGCA 55127
Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCG 6936
|| || ||||||||||| || || || | | || ||| || || | ||||| || ||
Sbjct 55126 GAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGACG 55068
Query 6937 AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCC 6996
| ||| |||||||| || | || || |||||||| || ||||| | ||| || || ||
Sbjct 55067 TAACATAAAACCTATTAGTCCGAAAGCGCCGTGGAGAGCAACAAACGTCCACAGACCGCC 55008
Query 6997 AAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGA 7056
| |||| ||| || |||||||| || ||||| ||||||||||| | | | ||
Sbjct 55007 CAATTGGCACCAACGAGTNAAATCTCCTTGGGCTTCAGGACCCCATAGTAACAACAACGA 54948
Query 7057 ATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAG 7116
|||| | | | | |||||||| || || || || || | |||||| ||||| || |
Sbjct 54947 ATGTGCTAAACTATTGGCAGGAGTCGAAACTGCGGCGGTTAAGAAATTGCATCCTTCCAA 54888
Query 7117 ATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCA 7176
||| ||| ||| | || ||||| ||||| || || || ||||| || || | |||
Sbjct 54887 ATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTACAAAGGTTGTACCTGTAAACCA 54828
Query 7177 ACCGCC 7182
|| ||
Sbjct 54827 GCCCCC 54822
>seq587
Length=401750
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593
|||||| ||||| | || ||||| |||| |||| | || ||||| |||||||| |||||
Sbjct 44570 AGCAGCTAGGTCCATGGGAAAGTTATGAGTATTATGTTCATGCATAACTTCCATACCAAG 44511
Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653
| || | || | | || || | || || | ||||||||||||| ||||| |
Sbjct 44510 GTTACCATGATTAATAATATCAGCTTAAGTATTAATTACACGACCTTGACTATCAACTAC 44451
Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713
|| |||||||| |||||||| || |||||||| ||||| ||||| | | | | |||| |
Sbjct 44450 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATATCTAAAGCAAT 44391
Query 7714 G 7714
|
Sbjct 44390 G 44390
>seq37
Length=530226
Score = 100 bits (110), Expect = 4e-16
Identities = 192/279 (69%), Gaps = 3/279 (1%)
Strand=Plus/Minus
Query 6386 AACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTA 6445
|| || ||||| |||||||| | ||| ||||| ||||| ||| |||| | | |||||
Sbjct 50082 AATTCAGGATCTTCCGCTGCACAGATTTCTTGGGAAACGAAGCCATAGGTGCGTAGGTTC 50023
Query 6446 AGTGCAAGACCAATAATACCAAT-GCTAGAGGTCCAAAGACCCATAACAGGAACAAACAG 6504
| || ||||| | | | | ||| |||| | ||| | || | |||||
Sbjct 50022 AAAGCCAGACCGACTACTCTAGGAGCTCTCA-TCCATAAACCGGTTACTAGTACAAATTA 49964
Query 6505 CATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAA 6564
|||||| ||||||| ||||| |||||| || | |||||||| || ||||| ||
Sbjct 49963 CATAAAAAAATGTAACCAACATTTATTGGAAAAAAAAACCCCAAAGATTTGGGACCA-AA 49905
Query 6565 ACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAA 6624
|| ||||| |||||||| ||||| || || | |||| || || | |||||| ||
Sbjct 49904 GCGGTTAGCGGTGACCATTGAATAAGTTTCTCCAACTTGGGTTGGATTAAACGCACAAAA 49845
Query 6625 AGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTC 6663
||||| | |||||||||||||| ||| |||| ||
Sbjct 49844 TGTATTAGCACAATCACCATCTTCAAATAAAATATTTTC 49806
>seq124
Length=378598
Score = 91.5 bits (100), Expect = 2e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264
||||||| ||| ||| |||| | | || ||||||||| || ||||| ||||| |
Sbjct 235898 AGTAAAGATCACTCTCCTTGTGGGTATGAATCACACAATCCGAAGTTGGATATGAAACGC 235839
Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324
| ||||| | |||| || || ||||| ||||||||||| || || |||||
Sbjct 235838 ATGTCAGCACATAACCCTTCTCCATTTGGTCGTCATCAAGGAATGACCCGTCAGATTGAT 235779
Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384
| || || ||| | || || || || || | || || || ||||| | ||||||||
Sbjct 235778 CCACTGTTCCCTCAACGATCTTCCCCGCGCATGTTGAGCAAGCCCCAGCCCTGCACGAGT 235719
Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCA 10437
| ||||| || ||||| | ||||| || || || ||| ||| ||| |||
Sbjct 235718 ATGGCAGGTCCATCCCTGCATTCTCAGCTGCGTCAAGGATGAACTCATCATCA 235666
>seq5090
Length=30266
Score = 84.2 bits (92), Expect = 3e-11
Identities = 102/140 (73%), Gaps = 7/140 (5%)
Strand=Plus/Minus
Query 8049 GAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATG 8108
|||||||| | ||||| || |||||||| | ||||||| | ||| || ||
Sbjct 13124 GAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAGATCAAGAAAACGGC----- 13070
Query 8109 CTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAG 8168
|| ||||| ||||| || ||||| ||| |||||| || ||||||| | |||| ||
Sbjct 13069 --GCTGCAACAGGAGCTGAATATGCAACAGTGATCCAAGGGTGCATACCCAAACGGAAAC 13012
Query 8169 AAAGTTCCCACTCACGACCC 8188
|||||||||||||| ||||
Sbjct 13011 TAAGTTCCCACTCACTACCC 12992
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621908852705360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |