Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq715 127 3e-24
seq318 127 3e-24
seq2451 116 5e-21
seq1699 87.8 2e-12
>seq715
Length=381403
Score = 127 bits (140), Expect = 3e-24
Identities = 186/261 (71%), Gaps = 4/261 (2%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| || || || || || ||||| | || |||||||| || || ||||| | |||
Sbjct 115262 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCA-ACC 115320
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||| |||||||| || ||||| || || ||||||||||| ||||||||||| ||
Sbjct 115321 CCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCA 115380
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710
|||||||| | || ||||| || || || ||| | || | ||| |||| |||
Sbjct 115381 AGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGA---TCCGTCGATCCATTTCAGCGC 115437
Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770
||||| ||||| |||| || || || || || | ||| || | ||||||| |||||
Sbjct 115438 CCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTT 115497
Query 127771 TTCTGATGGATCTTTGATGTA 127791
|| | ||| |||| |||
Sbjct 115498 CTCATTGGAATCCTTGACGTA 115518
>seq318
Length=266665
Score = 127 bits (140), Expect = 3e-24
Identities = 117/148 (79%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| ||||||||||| || ||||| | ||| ||||||||| ||| || ||||| || ||
Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| |||||| ||||| || || || |||||||| |||||||| || ||
Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678
|||||||| | || |||||||| |||
Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041
>seq2451
Length=68748
Score = 116 bits (128), Expect = 5e-21
Identities = 173/244 (71%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
||| ||||||||||| || ||||| | ||||||||||||| || || ||||| || ||
Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||||| |||||| ||||| | || || |||||||| ||||||| || ||
Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 127709
||||||| | || |||||||| ||| ||| || || | |||||| | |
Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974
Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769
|||| | ||||| |||| | || || || || | ||| || | |||||| ||||
Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCT 67914
Query 127770 TTTC 127773
| ||
Sbjct 67913 TCTC 67910
>seq1699
Length=96573
Score = 87.8 bits (96), Expect = 2e-12
Identities = 94/122 (77%), Gaps = 3/122 (2%)
Strand=Plus/Minus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| || ||||| || | ||||| || ||||| ||||| || |||
Sbjct 23306 AGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACC 23247
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAGCCAGAGAAGAAG 127636
|||||| || ||||||||||| | ||||||||| ||||| || ||| ||| |||||||
Sbjct 23246 TGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCA-AGAAGAAA 23188
Query 127637 AT 127638
||
Sbjct 23187 AT 23186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613294243982040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |