Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq715 127 3e-24 seq318 127 3e-24 seq2451 116 5e-21 seq1699 87.8 2e-12 >seq715 Length=381403 Score = 127 bits (140), Expect = 3e-24 Identities = 186/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || || || || ||||| | || |||||||| || || ||||| | ||| Sbjct 115262 GTGAAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCA-ACC 115320 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||| |||||||| || ||||| || || ||||||||||| ||||||||||| || Sbjct 115321 CCGCTTTTTCAACCAAAATATCGCGCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCA 115380 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | || ||||| || || || ||| | || | ||| |||| ||| Sbjct 115381 AGCGAACGCGAGGAGCCGCTCCGCGAACGACTTGGA---TCCGTCGATCCATTTCAGCGC 115437 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| ||||| |||| || || || || || | ||| || | ||||||| ||||| Sbjct 115438 CCACTCAGCCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTT 115497 Query 127771 TTCTGATGGATCTTTGATGTA 127791 || | ||| |||| ||| Sbjct 115498 CTCATTGGAATCCTTGACGTA 115518 >seq318 Length=266665 Score = 127 bits (140), Expect = 3e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| || ||||| | ||| ||||||||| ||| || ||||| || || Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| ||||| || || || |||||||| |||||||| || || Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||||||| | || |||||||| ||| Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041 >seq2451 Length=68748 Score = 116 bits (128), Expect = 5e-21 Identities = 173/244 (71%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| || ||||| | ||||||||||||| || || ||||| || || Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| ||||| | || || |||||||| ||||||| || || Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAG-GAGCGGGACTTTGTATCAAACCACTTCATCG 127709 ||||||| | || |||||||| ||| ||| || || | |||||| | | Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 |||| | ||||| |||| | || || || || | ||| || | |||||| |||| Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGCATGGGAGAGTTTGTTCT 67914 Query 127770 TTTC 127773 | || Sbjct 67913 TCTC 67910 >seq1699 Length=96573 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || ||||| || | ||||| || ||||| ||||| || ||| Sbjct 23306 AGCAAAATCACAGTGAAGGCCCTCATCTCTAGAGATCAGCTCATTTGAGAATGTCAAACC 23247 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA--TGAGCCAGAGAAGAAG 127636 |||||| || ||||||||||| | ||||||||| ||||| || ||| ||| ||||||| Sbjct 23246 TGGCATTAGTCCCCGCTTCTTAAGCCAGAAAATAGCACAGAAGCTGAACCA-AGAAGAAA 23188 Query 127637 AT 127638 || Sbjct 23187 AT 23186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613294243982040