Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq715 147 3e-30
>seq715
Length=381403
Score = 147 bits (162), Expect = 3e-30
Identities = 542/839 (65%), Gaps = 24/839 (3%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||||||||| || || ||||| || | || || ||| | ||||| | | || || |
Sbjct 114976 TCTTCTCGAAGAAATTCGTCTTCCCTTGCAACGAAATTAACTCCATCCAATCAAACGGAT 115035
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
|| ||| | || | | | || | ||| |||||| || || ||||| || |
Sbjct 115036 TCGCCACATTGTACATCCTACCGTACCCTAAAGCGTCCAGCAGCCGATCCGCCACGAACT 115095
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTC 159825
|||| || | ||| | |||| ||| || |||| || || | ||| || || ||
Sbjct 115096 CGATATACTGGCTCATAAGTTCACCGTTCATTCCCACCAAAGCGCA--GGGCAGAGCGTC 115153
Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885
||| ||||||| |||| || || ||||| ||| ||| ||| | ||| ||||| |
Sbjct 115154 GCACACAAACTCCCTCTCGATATCCACCGCGTCGCGCACGATCCCCCTGACTCGTTCCTT 115213
Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945
| |||| | | | ||| || | | | |||||| || |||||||| || ||
Sbjct 115214 GCTAAGCTTCATCCTCA-GCAATCCGTAGA--GCAAGCACGCGAAATCGCAGTGAAGGCC 115270
Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005
|| || || ||||| |||||||| || | | | || ||||| | ||| ||| |||
Sbjct 115271 TTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCAACCC-CGCTTTTT 115329
Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064
| |||||| || || ||| |||| | | || || |||||||||||| || ||||
Sbjct 115330 CAACCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAACG 115388
Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124
| | ||||| ||| | || || |||| | | | |||| | ||||| ||||
Sbjct 115389 CGAGGAGCCGCTCCGCGAACGAC---TTGGATCCGTCGATCCATTTCAGCGCCCACTCAG 115445
Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184
||||||| || |||||||| |||| ||||| || | | ||| || ||| ||
Sbjct 115446 CCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGG 115505
Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAG----TACATTTCTGCGTGCACATTTTCG 160240
|||||||| || | | ||| ||| ||||| || | ||| | || |||
Sbjct 115506 AATCCTTGACGTAGGTTTCGAGCAG----GAGACTATACATCTCAGAGTGAATGTTCTCG 115561
Query 160241 ATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAAC 160300
||||| ||||| ||| ||| || |||||| ||| | ||||| |||||
Sbjct 115562 ATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCTCCTTCATGAAC 115621
Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360
||| | ||||| | || | || |||| ||| || ||||| || | |||||
Sbjct 115622 CTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAATGCGAGGACGTGG 115681
Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420
| |||||| || | |||||| | |||| || |||||| | | ||| |||| |
Sbjct 115682 GTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTT---CCAGTGAGGGAGGTCCTGGGAC 115738
Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479
|| || ||||| || || |||| || |||| || | |||||||| |||||||
Sbjct 115739 AAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTCCCAGAT 115797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794879191690640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |