Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq715 147 3e-30 >seq715 Length=381403 Score = 147 bits (162), Expect = 3e-30 Identities = 542/839 (65%), Gaps = 24/839 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || ||||| || | || || ||| | ||||| | | || || | Sbjct 114976 TCTTCTCGAAGAAATTCGTCTTCCCTTGCAACGAAATTAACTCCATCCAATCAAACGGAT 115035 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| | || | | | || | ||| |||||| || || ||||| || | Sbjct 115036 TCGCCACATTGTACATCCTACCGTACCCTAAAGCGTCCAGCAGCCGATCCGCCACGAACT 115095 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTC 159825 |||| || | ||| | |||| ||| || |||| || || | ||| || || || Sbjct 115096 CGATATACTGGCTCATAAGTTCACCGTTCATTCCCACCAAAGCGCA--GGGCAGAGCGTC 115153 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTA 159885 ||| ||||||| |||| || || ||||| ||| ||| ||| | ||| ||||| | Sbjct 115154 GCACACAAACTCCCTCTCGATATCCACCGCGTCGCGCACGATCCCCCTGACTCGTTCCTT 115213 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | |||| | | | ||| || | | | |||||| || |||||||| || || Sbjct 115214 GCTAAGCTTCATCCTCA-GCAATCCGTAGA--GCAAGCACGCGAAATCGCAGTGAAGGCC 115270 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 || || || ||||| |||||||| || | | | || ||||| | ||| ||| ||| Sbjct 115271 TTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAACCCAGGCATCAACCC-CGCTTTTT 115329 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 | |||||| || || ||| |||| | | || || |||||||||||| || |||| Sbjct 115330 CAACCAAAATATCGC-GCAGAAGCTTCCAGAGAAGAAAATCCCCTCCACGCAAGCGAACG 115388 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAG 160124 | | ||||| ||| | || || |||| | | | |||| | ||||| |||| Sbjct 115389 CGAGGAGCCGCTCCGCGAACGAC---TTGGATCCGTCGATCCATTTCAGCGCCCACTCAG 115445 Query 160125 CCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA 160184 ||||||| || |||||||| |||| ||||| || | | ||| || ||| || Sbjct 115446 CCTTCTTCTGGACGCACGGCACCGTTTCGATGGCGTGGAAGAGTTTGTTCTTCTCATTGG 115505 Query 160185 CATCCTTGATCAGAGTAGCAATCAGCTTCGAG----TACATTTCTGCGTGCACATTTTCG 160240 |||||||| || | | ||| ||| ||||| || | ||| | || ||| Sbjct 115506 AATCCTTGACGTAGGTTTCGAGCAG----GAGACTATACATCTCAGAGTGAATGTTCTCG 115561 Query 160241 ATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAAC 160300 ||||| ||||| ||| ||| || |||||| ||| | ||||| ||||| Sbjct 115562 ATGGCGATCTGGAAGCCGTATAAGGCACGAGCCTCCGCCACCTGGATCTCCTTCATGAAC 115621 Query 160301 CTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGA 160360 ||| | ||||| | || | || |||| ||| || ||||| || | ||||| Sbjct 115622 CTTCCGGCGAGATTTTCGAGGACGATGCCATCGGAGGCGGCGAAGAATGCGAGGACGTGG 115681 Query 160361 GAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCC 160420 | |||||| || | |||||| | |||| || |||||| | | ||| |||| | Sbjct 115682 GTGATGAAGTGGCGCTCGTCAGCGGTGAGAGAGTT---CCAGTGAGGGAGGTCCTGGGAC 115738 Query 160421 AAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || || ||||| || || |||| || |||| || | |||||||| ||||||| Sbjct 115739 AAGTCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTCCCAGAT 115797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794879191690640