Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq379 104 2e-17
seq1068 91.5 1e-13
seq177 86.0 4e-12
seq670 84.2 2e-11
>seq379
Length=244149
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| |||| ||| | ||| || || || ||||||||||| ||||| | | |
Sbjct 80261 CGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAGGTCCTTCCG 80202
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
||||||||||| || || ||||||| | ||||||||| |||| || | || || |||
Sbjct 80201 TCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 80142
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| |||| | ||| ||||| | ||| || || || | |||||
Sbjct 80141 TCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGACCTCAAGGGTAATC 80082
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| ||||| |||| ||||| ||||| ||||||||
Sbjct 80081 GTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047
>seq1068
Length=260286
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
|||||| || | || || || | || | |||| || || || || || ||||||||
Sbjct 186264 GCCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 186323
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|||| ||| | || || | ||||||||| | || || | ||||||||||| | ||
Sbjct 186324 CAAAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGG 186383
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| ||||| ||||| || || || | ||| | |||| ||||| | ||| || |
Sbjct 186384 AATACCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCTACGGTGTCGGAGCTCTCGA 186442
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | || ||||| || || |||| ||||| ||||||||||||||
Sbjct 186443 CCTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 186491
>seq177
Length=344453
Score = 86.0 bits (94), Expect = 4e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| |||| ||| | || ||| || || ||||| ||||||||||| | | ||
Sbjct 69144 CGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTCCTTCCA 69085
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| ||||| || || || ||||||| | |||||||| || | || | || || |||
Sbjct 69084 TCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATCCCCTCCTTG 69025
Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683
|| || || |||| ||| | | | ||||| | ||| || || ||||| || ||
Sbjct 69024 TCCTGGATCTTAGCCTTAA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCCAACGTGAT 68966
Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || | ||||| || |||||||||||
Sbjct 68965 CGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 68930
>seq670
Length=332965
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || ||||| ||||| || | | ||| |||| |||| ||| ||||| | ||
Sbjct 148287 TCTTTCTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCCAGTTGCTTCCCAGCGAAG 148228
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | | ||||||||||| || | ||| || ||||| || ||| || | |
Sbjct 148227 ATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTG 148168
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | ||| || | || ||||| ||||| || ||||| || ||||| | ||| || |||
Sbjct 148167 TCAATTGTATCAGAACTCTCCACCTCCAACGTTATTGTCTTCCCCGTCAGAGTCTTCACG 148108
Query 39709 AAGATCTGCAT 39719
|| ||||||||
Sbjct 148107 AATATCTGCAT 148097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347252038077977
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |