Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq379 104 2e-17 seq1068 91.5 1e-13 seq177 86.0 4e-12 seq670 84.2 2e-11 >seq379 Length=244149 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | ||| || || || ||||||||||| ||||| | | | Sbjct 80261 CGCAGAACCAGATGAAGGGTGGACTCCTTCTGGATATTATAATCAGCCAAGGTCCTTCCG 80202 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 ||||||||||| || || ||||||| | ||||||||| |||| || | || || ||| Sbjct 80201 TCGTCCAATTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCCGGAGGAATACCCTCCTTG 80142 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| |||| | ||| ||||| | ||| || || || | ||||| Sbjct 80141 TCCTGGATTTTCGCCTTAACATTGTCTATCGTGTCAGAGCTCTCGACCTCAAGGGTAATC 80082 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||| ||||| ||||| |||||||| Sbjct 80081 GTCTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 80047 >seq1068 Length=260286 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| || | || || || | || | |||| || || || || || |||||||| Sbjct 186264 GCCGCCGCGGAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGC 186323 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| | || || | ||||||||| | || || | ||||||||||| | || Sbjct 186324 CAAAGTGCGGCCGTCTTCGAGCTGTTTCCCGGCGAAGATAAGGCGCTGCTGATCGGGAGG 186383 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | |||| ||||| | ||| || | Sbjct 186384 AATACCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCTACGGTGTCGGAGCTCTCGA 186442 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || ||||| || || |||| ||||| |||||||||||||| Sbjct 186443 CCTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 186491 >seq177 Length=344453 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | || ||| || || ||||| ||||||||||| | | || Sbjct 69144 CGCAGCACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTCCTTCCA 69085 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| || || || ||||||| | |||||||| || | || | || || ||| Sbjct 69084 TCCTCCAACTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATCCCCTCCTTG 69025 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || || || |||| ||| | | | ||||| | ||| || || ||||| || || Sbjct 69024 TCCTGGATCTTAGCCTTAA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCCAACGTGAT 68966 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||||| || ||||||||||| Sbjct 68965 CGTTTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 68930 >seq670 Length=332965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| ||||| || | | ||| |||| |||| ||| ||||| | || Sbjct 148287 TCTTTCTGGATATTGTAATCCGCAAGAGTGCGACCATCCTCCAGTTGCTTCCCAGCGAAG 148228 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | | ||||||||||| || | ||| || ||||| || ||| || | | Sbjct 148227 ATGAGCCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTG 148168 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||| || | || ||||| ||||| || ||||| || ||||| | ||| || ||| Sbjct 148167 TCAATTGTATCAGAACTCTCCACCTCCAACGTTATTGTCTTCCCCGTCAGAGTCTTCACG 148108 Query 39709 AAGATCTGCAT 39719 || |||||||| Sbjct 148107 AATATCTGCAT 148097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347252038077977