Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq251 140 4e-28
seq318 118 1e-21
seq715 113 6e-20
seq33 105 8e-18
seq2451 102 1e-16
seq149 89.7 6e-13
>seq251
Length=297614
Score = 140 bits (154), Expect = 4e-28
Identities = 280/408 (69%), Gaps = 13/408 (3%)
Strand=Plus/Minus
Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTC 15992
|| ||||| || ||||||| ||||| || |||| ||||| |||||||| ||||||
Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGTC 249790
Query 15993 AAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT 16052
||||||||||||| ||| || || | ||||||||| || | ||||| | |
Sbjct 249789 AAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTC 249730
Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 16111
||| |||| ||||||||||| ||||| | || || ||||| || ||| | | | |
Sbjct 249729 TGCCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCC 249670
Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171
||| ||| ||||| || || || ||| || || |||||||||||||| ||||| |
Sbjct 249669 TTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTC 249611
Query 16172 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 16230
| | | | || | || || || ||| || |||||| ||||| ||| || ||||
Sbjct 249610 AGAACCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAA 249552
Query 16231 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCAC 16290
||||||| || || || || || |||||| |||| || || || |||
Sbjct 249551 GAGTCTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAA 249492
Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCA 16338
|| | |||||||||||| ||| || || || |||| ||||||
Sbjct 249491 CAGCAGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAA---CTTCCA 249447
>seq318
Length=266665
Score = 118 bits (130), Expect = 1e-21
Identities = 184/261 (70%), Gaps = 3/261 (1%)
Strand=Plus/Minus
Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119
||||| ||||| | ||||||||| | ||||| | |||||| | | || || ||
Sbjct 56151 TATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGC 56092
Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179
| | ||||| |||||||||||| | |||||| | | | | || | ||| ||
Sbjct 56091 GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCG--GCGGTGCCGAG-AGCTTCGCC 56035
Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239
||||| || |||| || || || || ||||| || |||||||| || ||||||||
Sbjct 56034 GAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCG 55975
Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299
|| | ||||| |||||||| || || ||||| || || |||||| ||||| | |||
Sbjct 55974 ATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATC 55915
Query 102300 TCTCGTGACGAGGGACTCCAC 102320
|| || |||||||| || |||
Sbjct 55914 TCGCGAGACGAGGGTCTACAC 55894
>seq715
Length=381403
Score = 113 bits (124), Expect = 6e-20
Identities = 174/247 (70%), Gaps = 10/247 (4%)
Strand=Plus/Minus
Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136
||||||||| | ||||| | |||||| |||| || || || | || ||||| || ||
Sbjct 115501 TGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGA 115442
Query 102137 TTGGGCTATGAAGTGGTTTGATACA---AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193
||||| |||| ||| | || | |||||| || || ||||| ||| ||||
Sbjct 115441 GTGGGCGCTGAAATGGATCGACGGATCCAAGTCG------TTCGCGGAGCGGCTCCTCGC 115388
Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253
|| || || || ||||| || ||||||||||| ||||||||| || | |||| | ||
Sbjct 115387 GTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAA 115328
Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
||||| ||| | ||||| || | ||||| |||||| | ||||| || || || ||
Sbjct 115327 AAAGCGGGGT-TGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 115269
Query 102314 ACTCCAC 102320
|| |||
Sbjct 115268 CCTTCAC 115262
>seq33
Length=615807
Score = 105 bits (116), Expect = 8e-18
Identities = 198/287 (69%), Gaps = 22/287 (8%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||| ||||||||||| |||| |||||| |||||||| || |||| ||||||||| |
Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691
Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091
| | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || |||
Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751
Query 16092 CATGG-----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCG 16142
|| || ||||||| || || || || | |||| ||| |||| ||
Sbjct 34752 CAAGGAGCCTTTGATTT-------CGCCTTATCGAACAAGTCCC--TCACTCTTGAAGCA 34802
Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202
|| || || || |||| ||||||||| | | |||| ||| || || || || |
Sbjct 34803 CCAACTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCA 34862
Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249
| ||| || || | |||| || | ||||||||| || ||||| ||
Sbjct 34863 GCTTCTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909
>seq2451
Length=68748
Score = 102 bits (112), Expect = 1e-16
Identities = 172/247 (70%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 102074 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGC 102133
|| ||||||||| | |||| | |||||| | || || || || | | ||||| ||
Sbjct 67906 TGATGAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGC 67965
Query 102134 GGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193
|||||||||| | |||||| | | || | || | ||| || ||||| || | ||
Sbjct 67966 GGATTGGGCTCTCAAGTGGATCG--ACGGTGCCGAG-AGCTTCGCCGAGCGGCTGATAGC 68022
Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253
|| | || || |||| || |||||||| || |||| ||| || | ||||| ||
Sbjct 68023 GTTCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAA 68082
Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
|||||| || || ||||| || ||| |||||| || || | ||||| || ||||||||
Sbjct 68083 GAAGCGCGGGCTAATGCCGGGACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGG 68142
Query 102314 ACTCCAC 102320
|| |||
Sbjct 68143 TCTACAC 68149
>seq149
Length=554269
Score = 89.7 bits (98), Expect = 6e-13
Identities = 176/255 (69%), Gaps = 18/255 (7%)
Strand=Plus/Plus
Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976
|||||| || ||| | |||||| ||||| ||||||| | || || | | |||
Sbjct 82206 ATCAAGAATCTCAGGCCTATTCGTGGCGGCAATGACAATGACTCCAGTATTTCCAGTAAA 82265
Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036
||||||||| || ||||| | |||||| | ||||| |||| ||||||||| ||
Sbjct 82266 ACCATCCATTTCCGTCAACAACTGGTTCAGTGTTTGCTCCCTCTCATCATTCCCT---CC 82322
Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
|||| |||| | | ||| | || || |||||||||||||||||||| || | |||
Sbjct 82323 ACCAATCCCAGTTCCTCTCTGCCTGCCTACAGCATCAATCTCATCAATGAAAACCAAGCA 82382
Query 16094 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147
|| ||| ||||| | || || || |||| ||| |||| || || ||
Sbjct 82383 GGGGGAATTGGCCTTCGC---CTTGTTGAACAAG-TCCC--TCACTCTTGAAGCCCCAAC 82436
Query 16148 ACCAACAAACATCTC 16162
||||||||||||||
Sbjct 82437 GCCAACAAACATCTC 82451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620526932553680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |