Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq251 140 4e-28 seq318 118 1e-21 seq715 113 6e-20 seq33 105 8e-18 seq2451 102 1e-16 seq149 89.7 6e-13 >seq251 Length=297614 Score = 140 bits (154), Expect = 4e-28 Identities = 280/408 (69%), Gaps = 13/408 (3%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTC 15992 || ||||| || ||||||| ||||| || |||| ||||| |||||||| |||||| Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGT---GTTACCCTCAAAGCCATCCATTTCTGTC 249790 Query 15993 AAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT 16052 ||||||||||||| ||| || || | ||||||||| || | ||||| | | Sbjct 249789 AAAAGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTC 249730 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGC 16111 ||| |||| ||||||||||| ||||| | || || ||||| || ||| | | | | Sbjct 249729 TGCCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCC 249670 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 ||| ||| ||||| || || || ||| || || |||||||||||||| ||||| | Sbjct 249669 TTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTC 249611 Query 16172 TGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAA 16230 | | | | || | || || || ||| || |||||| ||||| ||| || |||| Sbjct 249610 AGAACCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAA 249552 Query 16231 GAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCAC 16290 ||||||| || || || || || |||||| |||| || || || ||| Sbjct 249551 GAGTCTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAA 249492 Query 16291 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCA 16338 || | |||||||||||| ||| || || || |||| |||||| Sbjct 249491 CAGCAGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAA---CTTCCA 249447 >seq318 Length=266665 Score = 118 bits (130), Expect = 1e-21 Identities = 184/261 (70%), Gaps = 3/261 (1%) Strand=Plus/Minus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| ||||| | ||||||||| | ||||| | |||||| | | || || || Sbjct 56151 TATATCAAGGACTCCGATGAGAAGAACAAACTCTTCCATGCCATCGACATGGTGCCCTGC 56092 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179 | | ||||| |||||||||||| | |||||| | | | | || | ||| || Sbjct 56091 GTGAAGAAGAAGGCGGATTGGGCTCTCAAGTGGATCG--GCGGTGCCGAG-AGCTTCGCC 56035 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||| || || || || ||||| || |||||||| || |||||||| Sbjct 56034 GAGCGGCTGATCGCGTTCGCTTGCGTCGAGGGGATTTTCTTCTCCGGGAGTTTCTGCGCG 55975 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||| |||||||| || || ||||| || || |||||| ||||| | ||| Sbjct 55974 ATATTCTGGCTGAAGAAGCGCGGGCTAATGCCGGGACTGACCTTCTCGAACGAATTGATC 55915 Query 102300 TCTCGTGACGAGGGACTCCAC 102320 || || |||||||| || ||| Sbjct 55914 TCGCGAGACGAGGGTCTACAC 55894 >seq715 Length=381403 Score = 113 bits (124), Expect = 6e-20 Identities = 174/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 102077 TGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGA 102136 ||||||||| | ||||| | |||||| |||| || || || | || ||||| || || Sbjct 115501 TGAGAAGAACAAACTCTTCCACGCCATCGAAACGGTGCCGTGCGTCCAGAAGAAGGCTGA 115442 Query 102137 TTGGGCTATGAAGTGGTTTGATACA---AAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193 ||||| |||| ||| | || | |||||| || || ||||| ||| |||| Sbjct 115441 GTGGGCGCTGAAATGGATCGACGGATCCAAGTCG------TTCGCGGAGCGGCTCCTCGC 115388 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 || || || || ||||| || ||||||||||| ||||||||| || | |||| | || Sbjct 115387 GTTCGCTTGCGTGGAGGGGATTTTCTTCTCTGGAAGCTTCTGCGCGATATTTTGGTTGAA 115328 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||||| ||| | ||||| || | ||||| |||||| | ||||| || || || || Sbjct 115327 AAAGCGGGGT-TGATGCCTGGGTTGACTTTCTCGAACGAGTTGATCTCGCGAGATGAAGG 115269 Query 102314 ACTCCAC 102320 || ||| Sbjct 115268 CCTTCAC 115262 >seq33 Length=615807 Score = 105 bits (116), Expect = 8e-18 Identities = 198/287 (69%), Gaps = 22/287 (8%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| |||||| |||||||| || |||| ||||||||| | Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751 Query 16092 CATGG-----TTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCG 16142 || || ||||||| || || || || | |||| ||| |||| || Sbjct 34752 CAAGGAGCCTTTGATTT-------CGCCTTATCGAACAAGTCCC--TCACTCTTGAAGCA 34802 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || || || || |||| ||||||||| | | |||| ||| || || || || | Sbjct 34803 CCAACTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCA 34862 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||| || || | |||| || | ||||||||| || ||||| || Sbjct 34863 GCTTCTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909 >seq2451 Length=68748 Score = 102 bits (112), Expect = 1e-16 Identities = 172/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 102074 TGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGC 102133 || ||||||||| | |||| | |||||| | || || || || | | ||||| || Sbjct 67906 TGATGAGAAGAACAAACTCTCCCATGCCATCGACACGGTGCCCTGCGTGAAGAAGAAGGC 67965 Query 102134 GGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193 |||||||||| | |||||| | | || | || | ||| || ||||| || | || Sbjct 67966 GGATTGGGCTCTCAAGTGGATCG--ACGGTGCCGAG-AGCTTCGCCGAGCGGCTGATAGC 68022 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 || | || || |||| || |||||||| || |||| ||| || | ||||| || Sbjct 68023 GTTCGTTTGCGTCAAGGGGATTTTCTTCTCCGGGAGTTTCTACGCGATATTCTGGCTGAA 68082 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||||| || || ||||| || ||| |||||| || || | ||||| || |||||||| Sbjct 68083 GAAGCGCGGGCTAATGCCGGGACTCACCTTCTCGAATGAATTGATCTCGCGAGACGAGGG 68142 Query 102314 ACTCCAC 102320 || ||| Sbjct 68143 TCTACAC 68149 >seq149 Length=554269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/255 (69%), Gaps = 18/255 (7%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||| | |||||| ||||| ||||||| | || || | | ||| Sbjct 82206 ATCAAGAATCTCAGGCCTATTCGTGGCGGCAATGACAATGACTCCAGTATTTCCAGTAAA 82265 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || ||||| | |||||| | ||||| |||| ||||||||| || Sbjct 82266 ACCATCCATTTCCGTCAACAACTGGTTCAGTGTTTGCTCCCTCTCATCATTCCCT---CC 82322 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| | | ||| | || || |||||||||||||||||||| || | ||| Sbjct 82323 ACCAATCCCAGTTCCTCTCTGCCTGCCTACAGCATCAATCTCATCAATGAAAACCAAGCA 82382 Query 16094 TGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| ||||| | || || || |||| ||| |||| || || || Sbjct 82383 GGGGGAATTGGCCTTCGC---CTTGTTGAACAAG-TCCC--TCACTCTTGAAGCCCCAAC 82436 Query 16148 ACCAACAAACATCTC 16162 |||||||||||||| Sbjct 82437 GCCAACAAACATCTC 82451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620526932553680