Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq251 138 1e-27
seq318 114 2e-20
seq2451 109 6e-19
seq1535 109 6e-19
seq33 95.1 1e-14
>seq251
Length=297614
Score = 138 bits (152), Expect = 1e-27
Identities = 275/404 (68%), Gaps = 5/404 (1%)
Strand=Plus/Minus
Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302
|| || || || ||||||| ||||| || | | ||||| |||||||| |||||||||
Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787
Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9362
|| ||||||| ||| || || | ||||||||| || | ||||| | | |||
Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727
Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422
|||| ||||||||||| ||||| | || ||||| || || ||| || ||| |
Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667
Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482
| || ||||| || || | ||| || || |||||||||||||| ||||| | |
Sbjct 249666 TTGAAAAGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGAA 249607
Query 9483 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541
| | | || | || || || ||| || |||||| ||||| ||| || ||||||||
Sbjct 249606 CCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAGT 249548
Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCC 9601
||| || || || || || |||||| ||||| || || || ||| |
Sbjct 249547 CTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAACAGC 249488
Query 9602 AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCA 9645
| | |||||||||||| ||| || || || |||| ||||||
Sbjct 249487 AGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAA---CTTCCA 249447
>seq318
Length=266665
Score = 114 bits (126), Expect = 2e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| |||||||| ||||| || || | ||| || |||||| || || ||||| || ||
Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||| ||| | || |||||||| |||||||||||| || ||||| || ||
Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432
|| ||||| | || ||||||||||||
Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041
>seq2451
Length=68748
Score = 109 bits (120), Expect = 6e-19
Identities = 159/223 (71%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||| |||||||| ||||| || || | |||||| |||||| || || ||||| || ||
Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||| ||| | || ||| |||| |||||||||||| || |||| || ||
Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAACCATTTCATTG 117463
| ||||| | || |||||||||||| || || ||| | ||| || | |
Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974
Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506
|||| | ||||||||||| | || || || || | ||||||
Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931
>seq1535
Length=214281
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226
||| || ||||| || || ||||| || || ||||| | || ||| ||||| | ||
Sbjct 153558 CTGAGGCCTTGGCGTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTG 153499
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
||||||| ||| |||||||| | |||||||||||| || | | ||| || || | ||
Sbjct 153498 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 153439
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346
|| | ||| ||||||| || || |||| | | | || | || | |||| ||
Sbjct 153438 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTA 153379
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
| | | ||||||||||||| ||||||||| || ||||| |||| ||
Sbjct 153378 GGACCTTTCAAGGGTTTTGAACCCAAAGTAATCATAATCAAAGTCACG 153331
Score = 91.5 bits (100), Expect = 2e-13
Identities = 117/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 106438 CTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC 106497
||| || ||||||| |||| ||||| || ||||||||||| |||||||| || || |
Sbjct 155101 CTCCTCCCTGACATATCTTGGTAGGGCAATCGATGCCAAATTACAAACAGCAGTTTC-TG 155043
Query 106498 CTTATC-TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556
| | ||| ||||| | ||| || || |||||||| ||| ||||| || |||| ||
Sbjct 155042 TTGGGCTTGTATACTCAATAATCTCAGTGCACAAGTTTGAAGATTTAATAGTACCCAGAT 154983
Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595
| | || || || ||| ||||||| | ||||| | |||
Sbjct 154982 TTTGCTGATTGCTTTTTCTGTTGCAAGTATCCTAGAAGA 154944
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226
||| || |||||||| || | ||| ||||| || || | || || ||||| | ||
Sbjct 168711 CTGAGGCCTTGGTGTTCCTGGATTCAAGAGAGTCGGAGAAGCATGTGTGAACCATCTCTG 168652
Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286
||||||| ||| |||||||| | |||||||||||| || | | ||| || || | ||
Sbjct 168651 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 168592
Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346
|| | ||| ||||||| || || |||| | | | || | || | ||| |
Sbjct 168591 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAACGGA 168532
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
| | ||||||| ||||||| ||| ||||| || ||||| |||| ||
Sbjct 168531 GGACCTCTCAAGTGTTTTGAACCCAGAGTAATCATAATCAAAGTCACG 168484
>seq33
Length=615807
Score = 95.1 bits (104), Expect = 1e-14
Identities = 192/283 (68%), Gaps = 14/283 (5%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| |||| ||| || |||||||| || |||| ||||||||| |
Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || ||
Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751
Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453
|| || ||||||| || | || || | || | || ||| || || |
Sbjct 34752 CAAGGAGCCTTTGATTT-----CGCCTTATCGAACAAGTCCCTCACTCTTGAAGCACCAA 34806
Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513
| || || |||| ||||||||| | | |||| ||| || || || || || ||
Sbjct 34807 CTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCAGCTT 34866
Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| || || | |||| || | ||||||||| || ||||| ||
Sbjct 34867 CTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589776010289560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |