Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq251 138 1e-27 seq318 114 2e-20 seq2451 109 6e-19 seq1535 109 6e-19 seq33 95.1 1e-14 >seq251 Length=297614 Score = 138 bits (152), Expect = 1e-27 Identities = 275/404 (68%), Gaps = 5/404 (1%) Strand=Plus/Minus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || ||||||| ||||| || | | ||||| |||||||| ||||||||| Sbjct 249846 TTAGTTGCCGCAATGACAATGATACCAGTGTTACCCTCAAAGCCATCCATTTCTGTCAAA 249787 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGC 9362 || ||||||| ||| || || | ||||||||| || | ||||| | | ||| Sbjct 249786 AGCTGGTTAAGAGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTCTGC 249727 Query 9363 TTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 |||| ||||||||||| ||||| | || ||||| || || ||| || ||| | Sbjct 249726 CTTCCAACGGCATCAATTTCATCCACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTC 249667 Query 9423 TCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 9482 | || ||||| || || | ||| || || |||||||||||||| ||||| | | Sbjct 249666 TTGAAAAGATCACGGACTCGAGAGGCACCAACTCCAACAAACATCTCAACAAATTCAGAA 249607 Query 9483 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 | | | || | || || || ||| || |||||| ||||| ||| || |||||||| Sbjct 249606 CCTG-AGATGGAGAAAAAAGGCACACCAGCTTCACCTGCAATTGCTTTAGCTAGAAGAGT 249548 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCC 9601 ||| || || || || || |||||| ||||| || || || ||| | Sbjct 249547 CTTTCCTGTGCCAGGGGGGCCAATAAGGAGGACACCCTTAGGGATGCGTGCACCAACAGC 249488 Query 9602 AAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCA 9645 | | |||||||||||| ||| || || || |||| |||||| Sbjct 249487 AGTGAATCTCTCAGGTTTCTTTAGGAATTCAACAA---CTTCCA 249447 >seq318 Length=266665 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| ||||| || || | ||| || |||||| || || ||||| || || Sbjct 55894 GTGTAGACCCTCGTCTCGCGAGATCAATTCGTTCGAGAAGGTCAGTCCCGGCATTAGCCC 55953 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || |||||||| |||||||||||| || ||||| || || Sbjct 55954 GCGCTTCTTCAGCCAGAATATCGCGCAGAAACTCCCGGAGAAGAAAATCCCCTCGACGCA 56013 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | || |||||||||||| Sbjct 56014 AGCGAACGCGATCAGCCGCTCGGCGAAG 56041 >seq2451 Length=68748 Score = 109 bits (120), Expect = 6e-19 Identities = 159/223 (71%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| ||||| || || | |||||| |||||| || || ||||| || || Sbjct 68149 GTGTAGACCCTCGTCTCGCGAGATCAATTCATTCGAGAAGGTGAGTCCCGGCATTAGCCC 68090 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || ||| |||| |||||||||||| || |||| || || Sbjct 68089 GCGCTTCTTCAGCCAGAATATCGCGTAGAAACTCCCGGAGAAGAAAATCCCCTTGACGCA 68030 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG-GAGCGAGACTTTGTGTCAAACCATTTCATTG 117463 | ||||| | || |||||||||||| || || ||| | ||| || | | Sbjct 68029 AACGAACGCTATCAGCCGCTCGGCGAAGCTCTCGGCAC----CGTCGATCCACTTGAGAG 67974 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| | ||||||||||| | || || || || | |||||| Sbjct 67973 CCCAATCCGCCTTCTTCTTCACGCAGGGCACCGTGTCGATGGC 67931 >seq1535 Length=214281 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || ||||| || || ||||| || || ||||| | || ||| ||||| | || Sbjct 153558 CTGAGGCCTTGGCGTTCCTGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTG 153499 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||||| ||| |||||||| | |||||||||||| || | | ||| || || | || Sbjct 153498 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 153439 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346 || | ||| ||||||| || || |||| | | | || | || | |||| || Sbjct 153438 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAAGGTA 153379 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | | ||||||||||||| ||||||||| || ||||| |||| || Sbjct 153378 GGACCTTTCAAGGGTTTTGAACCCAAAGTAATCATAATCAAAGTCACG 153331 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 106438 CTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC 106497 ||| || ||||||| |||| ||||| || ||||||||||| |||||||| || || | Sbjct 155101 CTCCTCCCTGACATATCTTGGTAGGGCAATCGATGCCAAATTACAAACAGCAGTTTC-TG 155043 Query 106498 CTTATC-TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAAT 106556 | | ||| ||||| | ||| || || |||||||| ||| ||||| || |||| || Sbjct 155042 TTGGGCTTGTATACTCAATAATCTCAGTGCACAAGTTTGAAGATTTAATAGTACCCAGAT 154983 Query 106557 TCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | | || || || ||| ||||||| | ||||| | ||| Sbjct 154982 TTTGCTGATTGCTTTTTCTGTTGCAAGTATCCTAGAAGA 154944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || |||||||| || | ||| ||||| || || | || || ||||| | || Sbjct 168711 CTGAGGCCTTGGTGTTCCTGGATTCAAGAGAGTCGGAGAAGCATGTGTGAACCATCTCTG 168652 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 ||||||| ||| |||||||| | |||||||||||| || | | ||| || || | || Sbjct 168651 GGACATCATGTGGTATGTCTGGATGACAGAATCAATATCATTCTTGTGAATTCCAACAGC 168592 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA 107346 || | ||| ||||||| || || |||| | | | || | || | ||| | Sbjct 168591 AACCCTCATCAACATGTGCTGAGGCCTTTCAACAACTTTCCCTTGGACTTTTAGAACGGA 168532 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | | ||||||| ||||||| ||| ||||| || ||||| |||| || Sbjct 168531 GGACCTCTCAAGTGTTTTGAACCCAGAGTAATCATAATCAAAGTCACG 168484 >seq33 Length=615807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 192/283 (68%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| |||| ||| || |||||||| || |||| ||||||||| | Sbjct 34634 AAACCCATCCATCTCCGTCAGAAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--A 34691 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | ||||| | | ||| | ||||| ||||| |||||||||||||| || || Sbjct 34692 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCCACAGCATCTATCTCATCAATGAACACTATG 34751 Query 9399 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCA 9453 || || ||||||| || | || || | || | || ||| || || | Sbjct 34752 CAAGGAGCCTTTGATTT-----CGCCTTATCGAACAAGTCCCTCACTCTTGAAGCACCAA 34806 Query 9454 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9513 | || || |||| ||||||||| | | |||| ||| || || || || || || Sbjct 34807 CTCCCACGAACAGCTCCACAAACTCGGAAGCGGCACAAGAGAAAAATGGCACCCCAGCTT 34866 Query 9514 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || || | |||| || | ||||||||| || ||||| || Sbjct 34867 CTCCAGCCACAGCTCTCGCCAAAAGAGTCTTGCCAGTACCAGG 34909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589776010289560