Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq752 354 1e-92 seq1263 304 2e-77 seq2510 129 7e-25 seq37 111 2e-19 seq587 109 7e-19 >seq752 Length=193215 Score = 354 bits (392), Expect = 1e-92 Identities = 488/677 (72%), Gaps = 4/677 (1%) Strand=Plus/Minus Query 181490 CTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACG 181549 || ||||| ||| ||| | || | ||||||||| | || || || || ||||| || Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553 Query 181550 TCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGC 181608 || ||||| || || |||||||| |||||| | || || ||| |||||| | || || Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494 Query 181609 GGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 181668 || || || || ||||| | | | | ||||| | | |||| || |||||||| Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434 Query 181669 AGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCT 181728 ||| || || ||||| || ||| |||| | || || || ||| | ||||| || || Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374 Query 181729 CCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAA 181787 |||||| | |||| || || ||||||||| | | ||| ||||||||||||| ||| Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGT 189314 Query 181788 TCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTG 181847 || | | ||||| || ||||| || || || || | ||| |||||||| || || |||| Sbjct 189313 TCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTG 189255 Query 181848 TATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCG 181907 |||| || || ||||| || || || || |||||||||||||||| ||||| ||||| | Sbjct 189254 TATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAG 189195 Query 181908 CGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCT 181967 |||| || || || ||| | || || |||| || |||||||||||||| | || || | Sbjct 189194 CGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCAT 189135 Query 181968 TCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTG 182027 | ||||||||||| ||||| ||| | |||| | || | || | || || || |||| Sbjct 189134 TTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTG 189075 Query 182028 TGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCG 182087 || || || |||||| | | | |||| ||||| |||||||| ||| || || Sbjct 189074 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTA 189015 Query 182088 ATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGA 182147 | |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || | Sbjct 189014 ACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 188955 Query 182148 TCTTCGGTATTGCGTTT 182164 |||| || |||| ||| Sbjct 188954 TCTTTGGGGTTGCTTTT 188938 >seq1263 Length=120960 Score = 304 bits (336), Expect = 2e-77 Identities = 417/578 (72%), Gaps = 4/578 (1%) Strand=Plus/Plus Query 181501 TGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACAC 181560 ||| ||| | || | ||||||||| | || || || || ||||| || || ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 181561 CCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAA 181619 || |||||||| |||||| | || || ||| |||||| | || || || || || | Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924 Query 181620 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCG 181679 | ||||| | | | | ||||| | | |||| |||||||||||||| || || | Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984 Query 181680 ATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCT 181739 |||| || ||| |||| | || || || ||| | ||||| || |||||||| || | Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044 Query 181740 TCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGA 181798 ||| || || ||||||||| | | ||||||||||||||||| ||| || | | ||| Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCA-ATTGCGA 55103 Query 181799 CCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATC 181858 || || ||||| || || || || | ||| |||||||| || || |||||||| || || Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163 Query 181859 TATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTC 181918 ||||| || || || || |||||||||||||||| ||||| ||||| ||||| || || Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223 Query 181919 CGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATG 181978 || ||| | || || |||| || |||||||||||||| | || || || ||||||||| Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283 Query 181979 GGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAG 182038 || ||||| ||| | |||| | || | || | || || || |||| | || || Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343 Query 182039 AATACTCTGTATCAAGACGGTGACCAAGCAAATACTTT 182076 |||||| | | | |||| ||||| |||||||| || Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 129 bits (142), Expect = 7e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302 ||||| ||||| ||||| || || |||||||| | ||||| |||||| | ||| | ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362 || || || || ||||| |||||||| || || ||||| || || |||||| | ||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422 ||| | || | ||||| || ||||| ||| || | ||||||||||| || ||||| Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821 Query 182423 AGAGGTAAC 182431 | || ||| Sbjct 56820 CGTGGAAAC 56812 >seq37 Length=530226 Score = 111 bits (122), Expect = 2e-19 Identities = 195/281 (69%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 182035 GGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAAC 182094 ||| |||| | | | | |||| ||||| || ||||| || || || || |||| Sbjct 49805 GGAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAAC 49864 Query 182095 TCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGG 182154 |||| | |||||| ||||||||||| || || |||||||| ||||| || ||||| || Sbjct 49865 CCAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGG 49923 Query 182155 TATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGG 182214 || ||| |||||| | ||||| ||||| |||||| ||||| | || | || Sbjct 49924 GGTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGG 49983 Query 182215 TCTTTGGA--CAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 182272 | | |||| || ||| ||| | ||||| ||| | ||||| || | |||| | Sbjct 49984 TTTATGGATGAGAGCTCCTAGAGTA--GTCGGTCTGGCTTTGAACCTACGCACCTATGGC 50041 Query 182273 TTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTT 182313 || || |||||||||||| | ||| | ||||| || || || Sbjct 50042 TTCGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082 >seq587 Length=401750 Score = 109 bits (120), Expect = 7e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 ||||| ||||| |||||||| || |||||||| |||||||| || | ||||| ||||| Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689 |||||||| | || |||| || || | | || | | | || |||||||||||| Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525 Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 ||||| || | |||| |||| ||||| || | ||||| || ||| Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610184923640760