Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015279.1
Length=190789
Score E
Sequences producing significant alignments: (Bits) Value
seq752 354 1e-92
seq1263 304 2e-77
seq2510 129 7e-25
seq37 111 2e-19
seq587 109 7e-19
>seq752
Length=193215
Score = 354 bits (392), Expect = 1e-92
Identities = 488/677 (72%), Gaps = 4/677 (1%)
Strand=Plus/Minus
Query 181490 CTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACG 181549
|| ||||| ||| ||| | || | ||||||||| | || || || || ||||| ||
Sbjct 189612 CTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACT 189553
Query 181550 TCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGC 181608
|| ||||| || || |||||||| |||||| | || || ||| |||||| | || ||
Sbjct 189552 TCATGGTATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGC 189494
Query 181609 GGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGA 181668
|| || || || ||||| | | | | ||||| | | |||| || ||||||||
Sbjct 189493 CGCAGTTTCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGA 189434
Query 181669 AGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCT 181728
||| || || ||||| || ||| |||| | || || || ||| | ||||| || ||
Sbjct 189433 AGCCCAAGGAGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCT 189374
Query 181729 CCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAA 181787
|||||| | |||| || || ||||||||| | | ||| ||||||||||||| |||
Sbjct 189373 CCACGGCACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGT 189314
Query 181788 TCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTG 181847
|| | | ||||| || ||||| || || || || | ||| |||||||| || || ||||
Sbjct 189313 TCA-ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTG 189255
Query 181848 TATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCG 181907
|||| || || ||||| || || || || |||||||||||||||| ||||| ||||| |
Sbjct 189254 TATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAG 189195
Query 181908 CGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCT 181967
|||| || || || ||| | || || |||| || |||||||||||||| | || || |
Sbjct 189194 CGGCTATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCAT 189135
Query 181968 TCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTG 182027
| ||||||||||| ||||| ||| | |||| | || | || | || || || ||||
Sbjct 189134 TTCATATGATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTG 189075
Query 182028 TGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCG 182087
|| || || |||||| | | | |||| ||||| |||||||| ||| || ||
Sbjct 189074 CTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTA 189015
Query 182088 ATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGA 182147
| |||| |||| |||||||| ||||||||||| || || |||||||| ||||| || |
Sbjct 189014 ACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 188955
Query 182148 TCTTCGGTATTGCGTTT 182164
|||| || |||| |||
Sbjct 188954 TCTTTGGGGTTGCTTTT 188938
>seq1263
Length=120960
Score = 304 bits (336), Expect = 2e-77
Identities = 417/578 (72%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 181501 TGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACAC 181560
||| ||| | || | ||||||||| | || || || || ||||| || || ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 181561 CCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAA 181619
|| |||||||| |||||| | || || ||| |||||| | || || || || || |
Sbjct 54866 TCATGGATTGGCTAGTTCCTATTTGGAAGGATGC-AATTTCTTAACCGCCGCAGTTTCGA 54924
Query 181620 CGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCG 181679
| ||||| | | | | ||||| | | |||| |||||||||||||| || || |
Sbjct 54925 CTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAG 54984
Query 181680 ATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCT 181739
|||| || ||| |||| | || || || ||| | ||||| || |||||||| || |
Sbjct 54985 ATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTT 55044
Query 181740 TCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGA 181798
||| || || ||||||||| | | ||||||||||||||||| ||| || | | |||
Sbjct 55045 TCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCA-ATTGCGA 55103
Query 181799 CCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATC 181858
|| || ||||| || || || || | ||| |||||||| || || |||||||| || ||
Sbjct 55104 CCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATT 55163
Query 181859 TATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTC 181918
||||| || || || || |||||||||||||||| ||||| ||||| ||||| || ||
Sbjct 55164 TATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTT 55223
Query 181919 CGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATG 181978
|| ||| | || || |||| || |||||||||||||| | || || || |||||||||
Sbjct 55224 CGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATG 55283
Query 181979 GGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAG 182038
|| ||||| ||| | |||| | || | || | || || || |||| | || ||
Sbjct 55284 GGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAA 55343
Query 182039 AATACTCTGTATCAAGACGGTGACCAAGCAAATACTTT 182076
|||||| | | | |||| ||||| |||||||| ||
Sbjct 55344 AATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 129 bits (142), Expect = 7e-25
Identities = 142/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 182243 GGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAA 182302
||||| ||||| ||||| || || |||||||| | ||||| |||||| | ||| | |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 182303 GACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCA 182362
|| || || || ||||| |||||||| || || ||||| || || |||||| | |||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 182363 TGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCC 182422
||| | || | ||||| || ||||| ||| || | ||||||||||| || |||||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 56821
Query 182423 AGAGGTAAC 182431
| || |||
Sbjct 56820 CGTGGAAAC 56812
>seq37
Length=530226
Score = 111 bits (122), Expect = 2e-19
Identities = 195/281 (69%), Gaps = 5/281 (2%)
Strand=Plus/Plus
Query 182035 GGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAAC 182094
||| |||| | | | | |||| ||||| || ||||| || || || || ||||
Sbjct 49805 GGAAAATATTTTATTTGAAGATGGTGATTGTGCTAATACATTTTGTGCGTTTAATCCAAC 49864
Query 182095 TCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGG 182154
|||| | |||||| ||||||||||| || || |||||||| ||||| || ||||| ||
Sbjct 49865 CCAAGTTGGAGAAACTTATTCAATGGTCACCGCTAACCGCTT-TGGTCCCAAATCTTTGG 49923
Query 182155 TATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGG 182214
|| ||| |||||| | ||||| ||||| |||||| ||||| | || | ||
Sbjct 49924 GGTTTTTTTTTCCAATAAATGTTGGTTACATTTTTTTATGTAATTTGTACTAGTAACCGG 49983
Query 182215 TCTTTGGA--CAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 182272
| | |||| || ||| ||| | ||||| ||| | ||||| || | |||| |
Sbjct 49984 TTTATGGATGAGAGCTCCTAGAGTA--GTCGGTCTGGCTTTGAACCTACGCACCTATGGC 50041
Query 182273 TTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTT 182313
|| || |||||||||||| | ||| | ||||| || || ||
Sbjct 50042 TTCGTTTCCCAAGAAATCTGTGCAGCGGAAGATCCTGAATT 50082
>seq587
Length=401750
Score = 109 bits (120), Expect = 7e-19
Identities = 123/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629
||||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||||
Sbjct 44406 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA 44465
Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTT 180689
|||||||| | || |||| || || | | || | | | || ||||||||||||
Sbjct 44466 GGTCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTT 44525
Query 180690 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734
||||| || | |||| |||| ||||| || | ||||| || |||
Sbjct 44526 ATGCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 610184923640760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |