Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq752 206 3e-48 seq1263 203 4e-47 seq2510 89.7 6e-13 seq2481 87.8 2e-12 >seq752 Length=193215 Score = 206 bits (228), Expect = 3e-48 Identities = 462/693 (67%), Gaps = 23/693 (3%) Strand=Plus/Minus Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 |||||||| || | | | || || ||||| ||| || ||||| || || |||||| Sbjct 189606 CCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGG 189547 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 ||||| ||||| | ||| || ||| | || ||||| || ||| |||| || |||||| Sbjct 189546 TATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTT 189487 Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 170780 || || |||| | | | | ||| | |||| || || || |||||||| ||| Sbjct 189486 TCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAA 189427 Query 170781 GGTTCATTTGT-TCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGG 170839 || ||||| |||||||| ||| | || ||| | |||| ||||| || | || || Sbjct 189426 GGAG-ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGG 189368 Query 170840 AGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCAT 170899 || ||||| |||||||| ||| | | ||| |||| | || | ||| | Sbjct 189367 CACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATT 189308 Query 170900 CAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCT 170959 ||||||| || ||| |||||||||||||| || || || || | | || || Sbjct 189307 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 189248 Query 170960 GATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAAT 171019 ||| ||||||||||||||| |||||||||| || || || ||||| || || || Sbjct 189247 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTAT 189188 Query 171020 TTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACAT 171079 ||||| | ||| | || | ||||| || || || |||||||| |||||||| || Sbjct 189187 ATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 189128 Query 171080 GATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGT 171139 |||||| ||||| || || | || | || | |||| || || |||||||| || || Sbjct 189127 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGT 189068 Query 171140 GCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAAC 171199 | || || || | ||||| || |||| | |||| || Sbjct 189067 AGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTGCAAA----TAC 189029 Query 171200 ATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAG 171259 ||||||||| ||| | || || || | ||||||||||| ||| | || || ||| | Sbjct 189028 ATTCCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCG 188969 Query 171260 ATTCTGGTCACAGATATTTGGTATTGCTTTCTC 171292 || ||||| || || ||||| ||||||| || Sbjct 188968 CTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTC 188936 >seq1263 Length=120960 Score = 203 bits (224), Expect = 4e-47 Identities = 368/539 (68%), Gaps = 0/539 (0%) Strand=Plus/Plus Query 170622 GGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCC 170681 || || ||||| ||| || ||||| || || ||||||||||| ||||| | ||| Sbjct 54822 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 54881 Query 170682 TCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATG 170741 || ||| | || ||||| || ||| |||| || |||||||| || |||| | | | Sbjct 54882 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 54941 Query 170742 GGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTA 170801 | ||| | |||| || ||||| |||||||| ||||| || |||||||| Sbjct 54942 GCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAGATTTNACTCGTTGGTGC 55001 Query 170802 CAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTC 170861 ||| | || ||| | |||| ||||| || | || || | || ||||| |||||||| Sbjct 55002 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTT 55061 Query 170862 ATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCA 170921 ||| | | |||||||| | || | ||| | ||||||| || ||| ||||| Sbjct 55062 ATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGACCTTATAATGCAATCGCA 55121 Query 170922 TTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCAC 170981 ||||||||| || || || || | | || ||||| ||||||||||||||| Sbjct 55122 TTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCT 55181 Query 170982 AGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATA 171041 |||||||||| || || || ||||| || || || ||||| | ||| | || | Sbjct 55182 GGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTC 55241 Query 171042 CAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTA 171101 ||||| || || || |||||||| |||||||| |||||||| ||||| || || | Sbjct 55242 CAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTG 55301 Query 171102 GGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 171160 || | || | |||| || || |||||||| | || | || || || | |||||| Sbjct 55302 GGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAAATACTTTATTTGAAGA 55360 >seq2510 Length=74850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171366 GTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCA 171425 || ||||| || || ||||| | || || || || | || || || || | ||||| Sbjct 57003 GTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCG 56944 Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 171485 ||||| || || || |||||||||||||| || ||||| ||| | || |||||||| | Sbjct 56943 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGT 56884 Query 171486 GCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTA 171545 || |||||| | | || || || ||||| ||| | ||||||| || || || || Sbjct 56883 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 56824 Query 171546 CC 171547 || Sbjct 56823 CC 56822 >seq2481 Length=71469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 154697 AGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGC 154756 |||||| || | | ||||||||| | ||||||| ||||||||||||||||||||||| Sbjct 24377 AGGAGACCATCATCGGAATGTATGTATCATACCAGTCTCAGCACATGGAACTAATCCTGC 24318 Query 154757 TAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGT 154792 ||||||| |||| || |||||| |||| | ||| Sbjct 24317 CAGTGCTGCCATGTGTGGAATGAAAATTGTTGCTGT 24282 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| |||||||| ||||| || ||||| |||||||||||||| || | Sbjct 27420 GAGAATCCTGCCTGGTACACCCAATACACACCGTATCAGGCTGAGATATCTCAAGGGCGT 27361 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| | || ||||| || | || | || ||||| ||| | || || | Sbjct 27360 CTAGAGTCTTTGCTTAACTACCAGACTATGATTTCGGATCTTACTGGACTCCCTATGTCG 27301 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTATTAGC-ATATA 153441 || || || | | ||||| | |||||| || || || ||||| ||||| || ||| Sbjct 27300 AATGCTTCATTGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC 27241 Query 153442 ATTCTACAAGAG-ATAAGAAGACTGTCATAGTTGATAAAGATATATTCCCACAGAC 153496 ||||| | | | | ||||||||| | || ||| ||| || ||||||||| Sbjct 27240 ATTCTGAAGGCGAAGAAGAAGACTTTTATTATTGCTAACAATTGTCACCCACAGAC 27185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579011747996960