Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq752 206 3e-48
seq1263 203 4e-47
seq2510 89.7 6e-13
seq2481 87.8 2e-12
>seq752
Length=193215
Score = 206 bits (228), Expect = 3e-48
Identities = 462/693 (67%), Gaps = 23/693 (3%)
Strand=Plus/Minus
Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660
|||||||| || | | | || || ||||| ||| || ||||| || || ||||||
Sbjct 189606 CCTTGTGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGG 189547
Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720
||||| ||||| | ||| || ||| | || ||||| || ||| |||| || ||||||
Sbjct 189546 TATACTCATGGATTGGCTAGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTT 189487
Query 170721 TCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAA 170780
|| || |||| | | | | ||| | |||| || || || |||||||| |||
Sbjct 189486 TCGACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAA 189427
Query 170781 GGTTCATTTGT-TCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGG 170839
|| ||||| |||||||| ||| | || ||| | |||| ||||| || | || ||
Sbjct 189426 GGAG-ATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGG 189368
Query 170840 AGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCAT 170899
|| ||||| |||||||| ||| | | ||| |||| | || | ||| |
Sbjct 189367 CACTTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATT 189308
Query 170900 CAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCT 170959
||||||| || ||| |||||||||||||| || || || || | | || ||
Sbjct 189307 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 189248
Query 170960 GATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAAT 171019
||| ||||||||||||||| |||||||||| || || || ||||| || || ||
Sbjct 189247 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTAT 189188
Query 171020 TTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACAT 171079
||||| | ||| | || | ||||| || || || |||||||| |||||||| ||
Sbjct 189187 ATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATAT 189128
Query 171080 GATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGT 171139
|||||| ||||| || || | || | || | |||| || || |||||||| || ||
Sbjct 189127 GATGGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGT 189068
Query 171140 GCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAAC 171199
| || || || | ||||| || |||| | |||| ||
Sbjct 189067 AGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTGCAAA----TAC 189029
Query 171200 ATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAG 171259
||||||||| ||| | || || || | ||||||||||| ||| | || || ||| |
Sbjct 189028 ATTCCGTGCGTTTAACCCAACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCG 188969
Query 171260 ATTCTGGTCACAGATATTTGGTATTGCTTTCTC 171292
|| ||||| || || ||||| ||||||| ||
Sbjct 188968 CTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTC 188936
>seq1263
Length=120960
Score = 203 bits (224), Expect = 4e-47
Identities = 368/539 (68%), Gaps = 0/539 (0%)
Strand=Plus/Plus
Query 170622 GGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCC 170681
|| || ||||| ||| || ||||| || || ||||||||||| ||||| | |||
Sbjct 54822 GGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGT 54881
Query 170682 TCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATG 170741
|| ||| | || ||||| || ||| |||| || |||||||| || |||| | | |
Sbjct 54882 TCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTCGACTCCTGCCAATAGTTTA 54941
Query 170742 GGTCATAGTCTTCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTA 170801
| ||| | |||| || ||||| |||||||| ||||| || ||||||||
Sbjct 54942 GCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGGAGATTTNACTCGTTGGTGC 55001
Query 170802 CAACTCGGAGGTTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTC 170861
||| | || ||| | |||| ||||| || | || || | || ||||| ||||||||
Sbjct 55002 CAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGCTTTCGGACTAATAGGTTTT 55061
Query 170862 ATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCA 170921
||| | | |||||||| | || | ||| | ||||||| || ||| |||||
Sbjct 55062 ATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCGACCTTATAATGCAATCGCA 55121
Query 170922 TTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCAC 170981
||||||||| || || || || | | || ||||| |||||||||||||||
Sbjct 55122 TTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCT 55181
Query 170982 AGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATA 171041
|||||||||| || || || ||||| || || || ||||| | ||| | || |
Sbjct 55182 GGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTTC 55241
Query 171042 CAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTA 171101
||||| || || || |||||||| |||||||| |||||||| ||||| || || |
Sbjct 55242 CAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTG 55301
Query 171102 GGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGA 171160
|| | || | |||| || || |||||||| | || | || || || | ||||||
Sbjct 55302 GGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGAAAATACTTTATTTGAAGA 55360
>seq2510
Length=74850
Score = 89.7 bits (98), Expect = 6e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 171366 GTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCA 171425
|| ||||| || || ||||| | || || || || | || || || || | |||||
Sbjct 57003 GTCGGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCG 56944
Query 171426 GAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGA 171485
||||| || || || |||||||||||||| || ||||| ||| | || |||||||| |
Sbjct 56943 GAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGT 56884
Query 171486 GCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTA 171545
|| |||||| | | || || || ||||| ||| | ||||||| || || || ||
Sbjct 56883 GCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTA 56824
Query 171546 CC 171547
||
Sbjct 56823 CC 56822
>seq2481
Length=71469
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 154697 AGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGC 154756
|||||| || | | ||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 24377 AGGAGACCATCATCGGAATGTATGTATCATACCAGTCTCAGCACATGGAACTAATCCTGC 24318
Query 154757 TAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGT 154792
||||||| |||| || |||||| |||| | |||
Sbjct 24317 CAGTGCTGCCATGTGTGGAATGAAAATTGTTGCTGT 24282
Score = 82.4 bits (90), Expect = 9e-11
Identities = 162/236 (69%), Gaps = 3/236 (1%)
Strand=Plus/Minus
Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323
||||||||| |||||||| ||||| || ||||| |||||||||||||| || |
Sbjct 27420 GAGAATCCTGCCTGGTACACCCAATACACACCGTATCAGGCTGAGATATCTCAAGGGCGT 27361
Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383
| || |||| | || ||||| || | || | || ||||| ||| | || || |
Sbjct 27360 CTAGAGTCTTTGCTTAACTACCAGACTATGATTTCGGATCTTACTGGACTCCCTATGTCG 27301
Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTATTAGC-ATATA 153441
|| || || | | ||||| | |||||| || || || ||||| ||||| || |||
Sbjct 27300 AATGCTTCATTGCTTGATGAGGGAACTGCTGCTGCTGAGGCAATGGCTATGTGCAATAAC 27241
Query 153442 ATTCTACAAGAG-ATAAGAAGACTGTCATAGTTGATAAAGATATATTCCCACAGAC 153496
||||| | | | | ||||||||| | || ||| ||| || |||||||||
Sbjct 27240 ATTCTGAAGGCGAAGAAGAAGACTTTTATTATTGCTAACAATTGTCACCCACAGAC 27185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579011747996960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |