Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30] 27,769 sequences; 726,710,453 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq752 329 4e-85 seq1263 275 7e-69 seq2510 129 7e-25 seq587 100 3e-16 >seq752 Length=193215 Score = 329 bits (364), Expect = 4e-85 Identities = 475/669 (71%), Gaps = 6/669 (1%) Strand=Plus/Minus Query 169384 TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACAC 169443 ||||||| | ||| | || || ||| | || |||||| | ||||| ||||| ||||| || Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542 Query 169444 CCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAG 169500 || ||| | ||| |||| || | ||||| || ||| | || || || || Sbjct 189541 TCATGGATTGGCT---AGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 189485 Query 169501 TACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGG 169560 || ||||| | | | | ||| || || | || ||||| ||||| ||||| ||||| Sbjct 189484 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425 Query 169561 CGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGC 169620 ||||| ||| ||||| |||||||| ||||| |||| ||||| || || || || | Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365 Query 169621 ATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCG 169680 || | | | || ||||| ||| | | || ||||| | || || | || | || Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCG 189305 Query 169681 TCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTAT 169740 ||||||||||| || |||||||||| ||| |||||||| ||||| ||| || || || Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245 Query 169741 CTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTT 169800 || ||||| || ||||| ||||||||||| ||| ||||| ||| | || || || Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185 Query 169801 CAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGAT 169860 | ||| | | || | ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125 Query 169861 GGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGA 169920 ||| || || || | ||||||| || |||| | ||||||||||||| ||| ||||| Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065 Query 169921 GAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACA 169980 || || || | |||||| ||||| |||||||| ||| |||||| | | || || Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005 Query 169981 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 170040 | ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || | Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945 Query 170041 TGCGTTTTC 170049 ||| ||||| Sbjct 188944 TGCTTTTTC 188936 >seq1263 Length=120960 Score = 275 bits (304), Expect = 7e-69 Identities = 409/579 (71%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 169384 TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACAC 169443 ||||||| | ||| | || || ||| | || |||||| | ||||| ||||| ||||| || Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865 Query 169444 CCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAG 169500 || ||| | ||| |||| || | ||||| || ||| | || || || || Sbjct 54866 TCATGGATTGGCT---AGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922 Query 169501 TACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGG 169560 || ||||| | | | | ||| || || | || ||||||||||| ||||| ||||| Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982 Query 169561 CGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGC 169620 ||||| ||| ||||| |||||||| ||||| |||| ||||| || || || || || Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042 Query 169621 ATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCG 169680 || | | | || ||||| ||| | | || |||||| | || || | || | || Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102 Query 169681 TCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTAT 169740 ||||||||||| || |||||||||| ||| |||||||| ||||| ||| || || || Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162 Query 169741 CTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTT 169800 || ||||| || ||||| ||||||||||| ||| ||||| ||| | || || || Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222 Query 169801 CAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGAT 169860 | ||| | | || | ||||| || || || ||||| ||||| ||||| || ||||| Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282 Query 169861 GGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGA 169920 ||| || || || | ||||||| || |||| | ||||||||||||| || ||||| Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342 Query 169921 GAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 || || || | |||||| ||||| |||||||| || Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381 >seq2510 Length=74850 Score = 129 bits (142), Expect = 7e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 170126 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 170185 || || ||||| || || || || || || ||| | ||||| ||| | ||||| ||| Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941 Query 170186 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCA 170245 ||||| ||||||||||| |||||||||||||| || || || || ||||| ||||||| Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881 Query 170246 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304 ||| |||| || ||||| || ||||||||| | || ||||| || || ||||| || Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822 >seq587 Length=401750 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746 ||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| || Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467 Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTAT 168806 |||||| | || || | || ||| || | || | | | || |||||||||||||| Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527 Query 168807 GCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 168849 |||||| | ||| | || ||||| || | || || |||||| Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574274193032520