Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Aquilaria_20agallochum_20[genbank_20GCA_5F000696445.1_202014-05-30]
27,769 sequences; 726,710,453 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq752 329 4e-85
seq1263 275 7e-69
seq2510 129 7e-25
seq587 100 3e-16
>seq752
Length=193215
Score = 329 bits (364), Expect = 4e-85
Identities = 475/669 (71%), Gaps = 6/669 (1%)
Strand=Plus/Minus
Query 169384 TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACAC 169443
||||||| | ||| | || || ||| | || |||||| | ||||| ||||| ||||| ||
Sbjct 189601 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 189542
Query 169444 CCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAG 169500
|| ||| | ||| |||| || | ||||| || ||| | || || || ||
Sbjct 189541 TCATGGATTGGCT---AGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 189485
Query 169501 TACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGG 169560
|| ||||| | | | | ||| || || | || ||||| ||||| ||||| |||||
Sbjct 189484 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGAGGTCCTGAAGCCCAAGG 189425
Query 169561 CGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGC 169620
||||| ||| ||||| |||||||| ||||| |||| ||||| || || || || |
Sbjct 189424 AGATTTGACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCAC 189365
Query 169621 ATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCG 169680
|| | | | || ||||| ||| | | || ||||| | || || | || | ||
Sbjct 189364 TTTCGGACTAATAGGTTTTATGTTACGTCAAATTGAACTTGCTCGGTCTGTTCAATTGCG 189305
Query 169681 TCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTAT 169740
||||||||||| || |||||||||| ||| |||||||| ||||| ||| || || ||
Sbjct 189304 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 189245
Query 169741 CTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTT 169800
|| ||||| || ||||| ||||||||||| ||| ||||| ||| | || || ||
Sbjct 189244 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 189185
Query 169801 CAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGAT 169860
| ||| | | || | ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 189184 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 189125
Query 169861 GGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGA 169920
||| || || || | ||||||| || |||| | ||||||||||||| ||| |||||
Sbjct 189124 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTACTGTAGA 189065
Query 169921 GAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACA 169980
|| || || | |||||| ||||| |||||||| ||| |||||| | | || ||
Sbjct 189064 AAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAACCCA 189005
Query 169981 GGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTAT 170040
| ||||| |||||||| |||||||| || |||||||| ||||| || ||||| || |
Sbjct 189004 AGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGT 188945
Query 170041 TGCGTTTTC 170049
||| |||||
Sbjct 188944 TGCTTTTTC 188936
>seq1263
Length=120960
Score = 275 bits (304), Expect = 7e-69
Identities = 409/579 (71%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 169384 TGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGGTACAC 169443
||||||| | ||| | || || ||| | || |||||| | ||||| ||||| ||||| ||
Sbjct 54806 TGCCTATTTCGCTTTAGGGGGCTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATAC 54865
Query 169444 CCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAG 169500
|| ||| | ||| |||| || | ||||| || ||| | || || || ||
Sbjct 54866 TCATGGATTGGCT---AGTTCCTATTTGGAAGGATGCAATTTCTTAACCGCCGCAGTTTC 54922
Query 169501 TACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGG 169560
|| ||||| | | | | ||| || || | || ||||||||||| ||||| |||||
Sbjct 54923 GACTCCTGCCAATAGTTTAGCACATTCGTTGTTGTTACTATGGGGTCCTGAAGCCCAAGG 54982
Query 169561 CGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGC 169620
||||| ||| ||||| |||||||| ||||| |||| ||||| || || || || ||
Sbjct 54983 AGATTTNACTCGTTGGTGCCAATTGGGCGGTCTGTGGACGTTTGTTGCTCTCCACGGCGC 55042
Query 169621 ATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCG 169680
|| | | | || ||||| ||| | | || |||||| | || || | || | ||
Sbjct 55043 TTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 55102
Query 169681 TCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTAT 169740
||||||||||| || |||||||||| ||| |||||||| ||||| ||| || || ||
Sbjct 55103 ACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGAT 55162
Query 169741 CTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTT 169800
|| ||||| || ||||| ||||||||||| ||| ||||| ||| | || || ||
Sbjct 55163 TTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCCAGTTTTGGTGTAGCGGCTATATT 55222
Query 169801 CAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGAT 169860
| ||| | | || | ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 55223 TCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGAT 55282
Query 169861 GGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGA 169920
||| || || || | ||||||| || |||| | ||||||||||||| || |||||
Sbjct 55283 GGGAGTTGCCGGTGTATTGGGCGCGGCTCTGCTATGCGCTATCCATGGTGCTATTGTAGA 55342
Query 169921 GAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959
|| || || | |||||| ||||| |||||||| ||
Sbjct 55343 AAATACTTTATTTGAAGATGGTGATGCTGCAAATACATT 55381
>seq2510
Length=74850
Score = 129 bits (142), Expect = 7e-25
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 170126 GGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAA 170185
|| || ||||| || || || || || || ||| | ||||| ||| | ||||| |||
Sbjct 57000 GGTCTGGCTCTGAACCTACGCGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 56941
Query 170186 GATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCA 170245
||||| ||||||||||| |||||||||||||| || || || || ||||| |||||||
Sbjct 56940 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 56881
Query 170246 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCC 170304
||| |||| || ||||| || ||||||||| | || ||||| || || ||||| ||
Sbjct 56880 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 56822
>seq587
Length=401750
Score = 100 bits (110), Expect = 3e-16
Identities = 120/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746
||| ||||| |||||||| || |||||||| |||||||| || | ||||| |||| ||
Sbjct 44408 CACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG 44467
Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTAT 168806
|||||| | || || | || ||| || | || | | | || ||||||||||||||
Sbjct 44468 TCGTGTAATTAATACTTAAGCTGATATTATTAATCATGGTAACCTTGGTATGGAAGTTAT 44527
Query 168807 GCATGAGCGTAACGCACACAACTTCCCACTCGATCTTGCTGCT 168849
|||||| | ||| | || ||||| || | || || ||||||
Sbjct 44528 GCATGAACATAATACTCATAACTTTCCCATGGACCTAGCTGCT 44570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574274193032520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |